Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_O23
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 221 4e-58
Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical pr... 29 5.8
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 28 7.7
AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormo... 28 7.7
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 28 7.7
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 221 bits (541), Expect = 4e-58
Identities = 102/170 (60%), Positives = 124/170 (72%)
Frame = +1
Query: 274 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQEL 453
A+ EQTR PR+V+V IQ+ I PT V EQ+ AI +V +I+ A G N+I QE
Sbjct: 63 AQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEA 122
Query: 454 WNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNT 633
W MPFAFCTRE+ PW EFAES GPTT FL +LA+K+ +VI+S ILERDE+ D++WNT
Sbjct: 123 WTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNT 182
Query: 634 AVVISDTGNVIGKHRKNHIPRVGDFIESNYYMEGNTGHPVFATRYGKIAV 783
AVVIS TG VIG+ RKNHIPRVGDF ES YYME GHPVF T+YG+I +
Sbjct: 183 AVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRIGI 232
Score = 58.0 bits (134), Expect = 8e-09
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +2
Query: 773 RSRLNICFGRHHVLNWMMFGQNGAEXVFNPSATI 874
R +NIC+GRHH NWMM+ NGAE +FNPSAT+
Sbjct: 229 RIGINICYGRHHPQNWMMYALNGAEIIFNPSATV 262
>Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical
protein C37A5.1 protein.
Length = 512
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 677 RCFPITFPVSLMTTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 531
+C P+TF ++ T + F+++ IE+T I IA L+ + V++
Sbjct: 75 KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 373 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 507
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 373 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 507
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical
protein C34E7.3 protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 551 SRRKVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATS 405
SR K+ +S+ + HG + +V+ AK F + +++ +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 825 IIQFKTWCRPKQMFNRDLAVSGRKYRMAGV 736
+++ K R K+MF R+L + KY++AGV
Sbjct: 365 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 394
>AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform a protein.
Length = 326
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 825 IIQFKTWCRPKQMFNRDLAVSGRKYRMAGV 736
+++ K R K+MF R+L + KY++AGV
Sbjct: 279 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 308
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 825 IIQFKTWCRPKQMFNRDLAVSGRKYRMAGV 736
+++ K R K+MF R+L + KY++AGV
Sbjct: 377 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,253
Number of Sequences: 27780
Number of extensions: 426396
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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