Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O20
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   1.2  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    28   2.1  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   2.1  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   3.6  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   4.7  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    27   4.7  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   4.7  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   4.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.3  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   8.3  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   8.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   8.3  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 471 TNDNQFNTQTLLSEASTPRTANPTDKKSNKQTCQVNNTKTK----NFDNTELKYAKKQMD 638
           TNDN  N + L    S   T+N + +K   +   V N  +K    N  +T+ + ++K + 
Sbjct: 50  TNDNNKNKEDLSKLYSDVTTSNTSHEKDGSEDISVLNVNSKGASLNQVSTQKRRSEKDLL 109

Query: 639 DAVTYLKNVA 668
            A+ Y + ++
Sbjct: 110 AAIAYCQKLS 119


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 642 AVTYLKNVAAQKRESDECELYGRLLAKKLRKLDEHQRDVAMHEIDNIMFRARM 800
           A TY KN     ++   C+ +GRLL+  L+ L     D  M     ++ R R+
Sbjct: 24  AETYFKNAEKVLQDCGVCDSFGRLLSTGLQCLYSVLMDTKMEPRVELLTRKRI 76


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +3

Query: 585 KTKNFDNTELKYAKKQMDDAVTYLKNVAAQKRESDECELYGRLLAKKLRKLDEHQRDVAM 764
           +T   DN  L+     + + +  L+    Q RE DE + + RLLA K       + ++ +
Sbjct: 445 QTLEDDNNSLRLMTSSLGNQIESLRT---QNREIDEEKNHLRLLASKNSDKALAETNIRL 501

Query: 765 HEIDNIMFRARMQTGWHATELH 830
            E+   +   RM+      E+H
Sbjct: 502 QEVTKELETLRMKNSNDLNEIH 523


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 266 DCILSQALLFSILFLCCGCFGXHRCC 189
           D IL+   L +I F  CG +  + CC
Sbjct: 148 DMILNFTTLMTIYFASCGSYAIYACC 173


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +1

Query: 118 ISKFQXMSWSNDLVLEFLELYRREQHLWXPKHPQHKNRI 234
           +   +  +W  D+ +++++     +HLW P +P   N I
Sbjct: 20  VDSLKKPNWFTDVSIDYVD--ELIEHLWFPSYPNQANEI 56


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 674 LSRNV-LQIRYSIVHLFLCVFQFGIVEVLRFRIVHLTRLFVGFLVG 540
           LS N+ + + YSI++L+   F      V  F I+    +++G LVG
Sbjct: 321 LSLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIENGLVYLGILVG 366


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
 Frame = +3

Query: 414 FLGGKYECDNTNQLEHEFYTNDNQFNTQTLLSEASTPRTANPTDKKSNKQTCQVNNTKTK 593
           + G K   D   + +      +    TQ  L  A+      PT KKS   T + ++T  K
Sbjct: 40  YKGWKNSWDEWVEQDRILQWTEENLKTQKELKNAAISTRQKPTSKKSASSTSKHDSTGVK 99

Query: 594 NFDNTELKYAKKQMD-DAVTYLKNVAAQKRES 686
                  + +   +D D+      +  QK ES
Sbjct: 100 TSGKRSRESSTVTVDGDSHELPSRIKTQKSES 131


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
 Frame = +3

Query: 411 SFLGGKYECDNTNQLEHEFYTNDNQFNTQTLLSEASTPRTA------NPTDKKSNKQTCQ 572
           SFLG     +N N      Y N+N  N      ++S+          N +   SNKQ   
Sbjct: 555 SFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQ--N 612

Query: 573 VNNTKTKNFDN 605
            NN   +N+ N
Sbjct: 613 YNNNNNQNYGN 623


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/59 (18%), Positives = 28/59 (47%)
 Frame = +3

Query: 597 FDNTELKYAKKQMDDAVTYLKNVAAQKRESDECELYGRLLAKKLRKLDEHQRDVAMHEI 773
           FD+ +++ + ++  DA+  L  +  +    +  EL+    A KL        ++ +H++
Sbjct: 369 FDHLDIQISLQEFTDAIRNLALIQNKLERGNLNELFAEFFADKLHNRKRKVTEILLHQL 427


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 546 KKSNKQTCQVNNTKTKNFDNTELKYAKKQMDDAVTYLKNVAAQKRESDECELY 704
           K  N  +  +  T   N  NTEL     Q++  + YL+    +KR S    ++
Sbjct: 559 KLQNAYSTVMEETAYLNVKNTELVSLNNQLERELAYLREQQHKKRTSSSFGIF 611


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +3

Query: 333 LXMHLKRKLKSQDGYSTTWFAYPIMESFLGGKYECDNTNQLEHEFYTNDNQFNTQTLLSE 512
           + ++  R L+  D     +      + F    YE D       +  T  +Q + Q L  +
Sbjct: 252 IYLNYTRSLRFDDKPDYAYLRKLFRDLFCRQSYEFDYMFDWTLKRKTQQDQQHQQQLQQQ 311

Query: 513 AS-TPRTANPTDKKSNKQTCQVNNTKTKNFD 602
            S TP+  NP  ++S+ +  Q  N   K  D
Sbjct: 312 LSATPQAINPPPERSSFRNYQKQNFDEKGGD 342


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 546 KKSNKQTCQVNNT--KTKNFDNTELKYAKKQMDDA--VTYLKNVAAQKRESDECE 698
           KK   Q  Q+ N   K +NF     +Y KK  D    +TYL N+AA   E+D+ +
Sbjct: 262 KKKADQEKQIGNENYKKRNFPVAIEQY-KKAWDTYKDITYLNNLAAAYFEADQLD 315


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 726  LRKLDEHQRDVAMHEIDNIMFRARMQTGWHATELHGFNFASTE 854
            LR+L E    V +   D+++   ++Q     TELHGF  A+ E
Sbjct: 1453 LRRLLEFDEVVELMMFDDLVNIFKLQGRARKTELHGFIRANAE 1495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,126
Number of Sequences: 5004
Number of extensions: 62386
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)