Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O17
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   3.6  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   8.2  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   8.2  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 141 PSQQCAVS-LDQFFVYNPYRLLYLSLRIQLDKQNL 40
           P + C  S L+Q   Y+PYR++Y+S  +    +++
Sbjct: 453 PRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDV 487


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 274 ILFWSSFLSTLKFAISVKLFKRRFLNKQS 188
           ++FW   L  +KF  ++  +KRR  N+Q+
Sbjct: 694 MVFWRYQLRAIKFYFNISDWKRREFNRQT 722


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 378 DNSALKDFKVEYSKSSRAT 434
           +NSALKD  VEY  +  AT
Sbjct: 87  ENSALKDINVEYQSNLSAT 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,436
Number of Sequences: 5004
Number of extensions: 59093
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)