Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O17
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478...    48   1e-05
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748...    43   3e-04
12_02_0125 - 13949652-13949822,13949955-13950089,13950309-13950566     30   2.1  
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    30   2.1  

>01_06_0634 +
           30746767-30747012,30747083-30747118,30747554-30747850,
           30748482-30748544,30748643-30748696,30748837-30748854,
           30749554-30749625,30749731-30749787,30750160-30750236,
           30751013-30751094,30751585-30751701,30752083-30752210,
           30753074-30753143,30753725-30753765,30753963-30753990,
           30754151-30754210
          Length = 481

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +3

Query: 57  VEYAKTGRAACKGCKQKIDQGSLRIAVMVQS-AFFDGKQPNWHHEDCL-FKKRRLNSFTE 230
           VEYAK+GR++CK C + I +G+LR+    +    FD  +  W+H  C       ++   +
Sbjct: 17  VEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK--WYHVACFPSSSHPIDPVEK 74

Query: 231 IANFNVLKNEDQKRIK 278
           +  F+ +K ED++ ++
Sbjct: 75  VKGFDSIKEEDREEVR 90



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +3

Query: 30  GIP*DFAYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQS-AFFDGKQPNWHHEDC 194
           G+  + +  VEYAK+GR+ CKGC + I  G+LR+   ++    FD  +  W+H  C
Sbjct: 119 GVAENVSISVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK--WYHIAC 172


>07_03_0061 +
           12972944-12973054,12974509-12974536,12974701-12974870,
           12975878-12976043,12976122-12976425,12977155-12977350,
           12977464-12977622,12978311-12978371,12978904-12978967,
           12979099-12979346,12980039-12980250,12980344-12980456,
           12980547-12980623,12980710-12980873,12981493-12981564,
           12981565-12981760,12981813-12981854,12982358-12982440,
           12982534-12982671,12982942-12983124,12983216-12983263
          Length = 944

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 43/81 (53%)
 Frame = +3

Query: 57  VEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCLFKKRRLNSFTEIA 236
           +E AK+ R +C+ C +KI +G++R+     S+  +G+   W+H  C  +     +    +
Sbjct: 82  IEVAKSARTSCRRCGEKIKKGTVRV-----SSKLEGQ--GWYHASCFLEMSPAATVENFS 134

Query: 237 NFNVLKNEDQKRIKTTIENSA 299
            + +L +ED++ +   ++  A
Sbjct: 135 GWEILSHEDKRAVLDLVKKDA 155



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 48  AYQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCLFK 203
           A++ EYAK+GR++CK C+  I +  LR+  M+           W+H  C+ +
Sbjct: 7   AWKAEYAKSGRSSCKSCRSPIGKDQLRLGKMM-----------WNHASCILR 47


>12_02_0125 - 13949652-13949822,13949955-13950089,13950309-13950566
          Length = 187

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 394 RTSKLNIRKAVGPHALXCEIKICKDEIRICKILYDTEVGMKY 519
           R + + +R+     AL C  +IC  + +IC +L  T VG +Y
Sbjct: 70  RKASVPLRQPTPGGALACMKEICNLKSKICNLLQVTSVGKRY 111


>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 99  KQKIDQGSLRIAVMVQSAFFDGKQPNWHH 185
           K + D GS+ + V+  S F D  QP WH+
Sbjct: 355 KDEPDVGSVDLPVLAVSGFLDAAQPIWHN 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,050
Number of Sequences: 37544
Number of extensions: 331003
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)