Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O17
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    61   1e-09
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    61   1e-09
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    38   0.013
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    34   0.16 
AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical...    29   4.4  

>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
 Frame = +3

Query: 51  YQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCLFKK----RRLN 218
           Y +EYAK+GR+ CK CK+ I    LR+++   S FFDG   +W H +C + K    R   
Sbjct: 10  YAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIRGRDDI 69

Query: 219 SFTEIANFNVLKNEDQKRIKTTIEN 293
           + + I   + L+ EDQ++++  I++
Sbjct: 70  NISSIRGVDWLRWEDQEKLRQEIQH 94


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
 Frame = +3

Query: 51  YQVEYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPNWHHEDCLFKK----RRLN 218
           Y +EYAK+GR+ CK CK+ I    LR+++   S FFDG   +W H +C + K    R   
Sbjct: 10  YAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIRGRDDI 69

Query: 219 SFTEIANFNVLKNEDQKRIKTTIEN 293
           + + I   + L+ EDQ++++  I++
Sbjct: 70  NISSIRGVDWLRWEDQEKLRQEIQH 94


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
 Frame = +3

Query: 60  EYAKTGRAACKGCKQKIDQGSLRIAVMVQSAFFDGKQPN--------WHHEDCLFK---K 206
           +YAK   A C+ CK ++++G LR+  ++ + F   K P+        + H +CLF+   K
Sbjct: 12  DYAKRV-AKCQKCKMQLEKGVLRMGKIMPNFFVAAKDPSKPPPDMKQYFHTNCLFEMLFK 70

Query: 207 RR-----LNSFTEIANFNVLKNEDQKRIKTTIENSA 299
            R     ++   EI  F  L  EDQ  IK  ++  A
Sbjct: 71  ARPTTKVIDETDEIEGFEDLNAEDQDEIKKLVDELA 106


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -2

Query: 874 LSLSCRDSPVNCTPKFFLHLFYLYSLKHFYVYQTIXXXXXXXXXVLCPLSTLFRLLLHS- 698
           + + C    ++C P+FFLHLF LY   +F+               +     +F L+L S 
Sbjct: 63  MKIHCAALLIHCVPRFFLHLFDLY--YYFFGVDCYDMQPSSLRCFILRFPYMFGLILSST 120

Query: 697 -SIFLLECQGFQVVLS 653
            +IFL+  +GF    S
Sbjct: 121 TTIFLMIERGFATYYS 136


>AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical
           protein Y57A10A.25 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 796 KHFYVYQTIXXXXXXXXXVLCPLSTLFRLLLHSSIFLLECQGFQVVLSPFSQLSDL 629
           KH + +  +           CPL TLFR LL SS       GF  +   + QL D+
Sbjct: 140 KHSFDFNRLIQSGVRFQGANCPLKTLFRELLGSSATFCLHNGFIDLAFIYKQLYDI 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,556,157
Number of Sequences: 27780
Number of extensions: 333485
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)