Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O15
         (1138 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    30   3.5  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 37/147 (25%), Positives = 41/147 (27%), Gaps = 1/147 (0%)
 Frame = -3

Query: 950 GKXGXKXXSMWXEGGXGXVXGKHXGRGELPKGXEXAEGXRXPXXGNKXXAKEGXGXXXXG 771
           G+ G +  S     G G   G H  R   P G     G      G +       G     
Sbjct: 240 GRHGSRSGSPGGRHGHGG-HGGHGSRSGSP-GGRHGHGGSGHHRGGRHGGHGRHGSCSGS 297

Query: 770 XXEKXGTGGHXXKXLRXRERRXXXXTXXQGGPRXGXEXGXHSXGGXXGSRVXSFXGXXGI 591
              + G GGH     R             G  R G     H   G  GSR  S  G  G 
Sbjct: 298 PRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR----HGGHGRHGSRSGSPGGRHGH 353

Query: 590 XEAXXKRXCXGGRGNAGS-SEGXXGDG 513
                   C G  G  GS S    G G
Sbjct: 354 GGRHGPPHCPGRHGRHGSRSHSPRGHG 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,015
Number of Sequences: 27780
Number of extensions: 133617
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)