Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O14
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.88 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.88 
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   6.2  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    26   6.2  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   6.2  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   6.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 512  GRSRARVDLSVMVQTDNQHGSHRVKNTITQYTNELFHTQ 396
            GR  A+V  +V  +T N HG   V  T + Y NE F ++
Sbjct: 2057 GRENAQVT-AVTTKTTNVHGDEMVVTTTSAYENEKFSSK 2094


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 495 SRPRATEDGTFVS*WKDVDCGSSVS-AAQHVATRVPARRPPQ--PLASQAAPGQSSNSSN 665
           S+ +  E+  FV  + +   G+  S +A  +   +P+ RPP+  P  S  AP      SN
Sbjct: 202 SQDQIAENADFVKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSN 261

Query: 666 GQKEKP*ISGTEP 704
           G    P  S   P
Sbjct: 262 GTVSSPPNSPPRP 274


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 714 SLARVQFQRSTVFLFVRWSYLSFDREQPARQEAAVVCERGLGSQHVEQRILSCHNLHLSI 535
           +L  V+ + S  F  V+W+  SFD    A +E        LGS        S +N + S+
Sbjct: 49  TLNHVKQEPSDGFSSVKWASTSFDSTVTAHKEETPY-SSSLGSHDSSSLPSSTNNRYSSV 107

Query: 534 MKRRC 520
           +K  C
Sbjct: 108 LKELC 112


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 512 RGRHLRFIMERCRLWQLSIRCSTCCDPSP 598
           RGR  RF    C LW + I C  C D +P
Sbjct: 204 RGRSARFEWVVCFLWSIYI-CLLCLDLAP 231


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 577 NMLRPESPLADHRSLLPRRLLPVKAQIAP 663
           N+ +PES L DHR++  R+ L   + + P
Sbjct: 37  NLKQPESTLNDHRTIAARQKLYTTSILTP 65


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 335 CFYN*KSCHY*YESQVNNV--NFVCEIIRS 418
           CFYN K  HY  E++V +V  + V E+I++
Sbjct: 61  CFYNHKKPHYSVETEVKDVIISKVVELIKT 90


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
 Frame = +3

Query: 492 HSRPRAT---EDGTFVS*WKDVDCGSSVSAAQHVATRVPARRPPQPLASQAAPGQSSNSS 662
           HS+P  T   E  T V   K     S+ SA+    T VP         S A P      +
Sbjct: 273 HSKPSETVKSEQETAVEHPKPTATTSAPSASP---TGVPVEEESHKATSDAVP-----PA 324

Query: 663 NGQKEKP*ISGTEPGPAITHHTTTPKLLISKTTDSLNTECPR 788
             + E    S  E  P  +  TT P+ +++ TT  ++   PR
Sbjct: 325 EAKPEPVPASAAERAPT-SESTTVPETIVASTTKVISEPAPR 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,512
Number of Sequences: 5004
Number of extensions: 74150
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)