Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O14
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0214 - 19111493-19112413,19112674-19112750,19113843-191144...    31   1.2  
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    30   2.8  
10_08_0802 + 20680685-20681059,20681218-20681353,20682047-206821...    29   4.9  
03_05_0173 + 21502765-21504216                                         28   8.6  
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188...    28   8.6  

>05_04_0214 -
           19111493-19112413,19112674-19112750,19113843-19114412,
           19114605-19114754,19115499-19115643
          Length = 620

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 549 DCGSSVSAAQHVATRVPARRPPQPLASQ--AAPGQSSNSSNGQKEKP*ISGTEPGPAI 716
           +  SS+  + H+A  + A  PP P A Q  AAP Q+ N      E+  +S T+P PA+
Sbjct: 148 NASSSLQPSDHLAAALAAVAPPPPPAVQLPAAPAQAGNRDGEAHEEAELS-TQP-PAL 203


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 597 PARRPPQPLASQAAP--GQSSNSSNGQKEKP*ISGTEPGPAITHHTTTPKLLISKTTD 764
           P+  PP P +  AAP  GQS NS   +KE    + T+ G  +     T +L++S  +D
Sbjct: 100 PSSPPPVPPSPTAAPTTGQSWNSEPERKEG--ATATDVGHDVKTEKVTNQLIVSDDSD 155


>10_08_0802 +
           20680685-20681059,20681218-20681353,20682047-20682180,
           20682722-20682827,20683227-20683312,20683648-20683836,
           20684349-20684522,20684638-20684751,20684887-20685141
          Length = 522

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 552 CGSSVSAAQHVATRVPAR-RPPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGPA 713
           CGSS+    H   + P R RPP P      P + S + N  +     S     PA
Sbjct: 4   CGSSLRVGSHAPEKPPRRARPPPPPPQPHHPRRPSFTLNAHQAAASSSAASAAPA 58


>03_05_0173 + 21502765-21504216
          Length = 483

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 603 RRPPQPLASQAAPGQSSNSSNGQKE 677
           R  PQP+A+ AAP  + N   GQ++
Sbjct: 341 RTGPQPVAAGAAPNPAGNQQQGQRK 365


>02_04_0460 -
           23118221-23118406,23118417-23118671,23118763-23118851,
           23119527-23119605,23121317-23121484,23121760-23122137
          Length = 384

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 585 ATRVPARRPPQPLASQAAPGQSSNSSN 665
           A  +P R P  P+A+   PG SS+SS+
Sbjct: 90  AADLPPRPPSDPVAASPPPGSSSSSSD 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,547,979
Number of Sequences: 37544
Number of extensions: 452525
Number of successful extensions: 1396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)