Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O14
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    33   0.36 
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    33   0.36 
Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family pr...    30   2.5  
AF077537-13|AAC26282.1|  190|Caenorhabditis elegans Hypothetical...    30   2.5  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    29   5.9  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 25/80 (31%), Positives = 36/80 (45%)
 Frame = +3

Query: 540 KDVDCGSSVSAAQHVATRVPARRPPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGPAIT 719
           K  D  S  S  +  A + PA+  P+P + +A     S+S +   EKP    T   PA T
Sbjct: 278 KKADLSSDFSDDEAPAKKTPAKAAPKPASKKA----ESSSDSSDDEKPAAKST---PAKT 330

Query: 720 HHTTTPKLLISKTTDSLNTE 779
               T K   S ++DS + E
Sbjct: 331 TPKPTAKKAASSSSDSSDDE 350


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 25/80 (31%), Positives = 36/80 (45%)
 Frame = +3

Query: 540 KDVDCGSSVSAAQHVATRVPARRPPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGPAIT 719
           K  D  S  S  +  A + PA+  P+P + +A     S+S +   EKP    T   PA T
Sbjct: 553 KKADLSSDFSDDEAPAKKTPAKAAPKPASKKA----ESSSDSSDDEKPAAKST---PAKT 605

Query: 720 HHTTTPKLLISKTTDSLNTE 779
               T K   S ++DS + E
Sbjct: 606 TPKPTAKKAASSSSDSSDDE 625



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 24/76 (31%), Positives = 37/76 (48%)
 Frame = +3

Query: 540 KDVDCGSSVSAAQHVATRVPARRPPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGPAIT 719
           K  D  S  S  +  A + PA+  P+P+A +A   +SS+ S+  ++KP     +P PA  
Sbjct: 278 KKADSSSDSSDDEAPAKKTPAKAAPKPVAKKA---ESSSDSSDDEKKP---AAKPTPA-- 329

Query: 720 HHTTTPKLLISKTTDS 767
               TPK +  K   S
Sbjct: 330 --KATPKPVAKKAESS 343



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = +3

Query: 540 KDVDCGSSVSAAQHVATRVPARRPPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGPAIT 719
           K  D  S  S  +  A + PA+  P+P + +A     S+S +   EKP    T   PA  
Sbjct: 431 KKADSSSDSSDDEAPAKKTPAKAAPKPASKKA----ESSSDSSDDEKPAAKST---PAKI 483

Query: 720 HHTTTPKLLISKTTDSLNTE 779
               T K + S ++DS + E
Sbjct: 484 TPKPTAKKVASSSSDSSDDE 503



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = +3

Query: 558 SSVSAAQHVATRVPARRPPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGPAITHHTTTP 737
           SS    + VA   PA+  P+P+A +A   +SS+ S+  ++KP     +P PA      TP
Sbjct: 346 SSDDEKKPVAKPAPAKATPKPVAKKA---ESSSDSSDDEKKP---AAKPTPA----KATP 395

Query: 738 KLLISKTTDS 767
           K +  K   S
Sbjct: 396 KPVAKKAESS 405


>Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical
           protein T26E4.10 protein.
          Length = 90

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 548 RLWQLSIRCSTCCDPSPRSQTTAASCLAGC 637
           R W     C  CC P+P    T A C  GC
Sbjct: 54  RQWGCGCDCWGCCGPTPDPAATPAPCNCGC 83


>Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical
           protein T26E4.9 protein.
          Length = 86

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 548 RLWQLSIRCSTCCDPSPRSQTTAASCLAGC 637
           R W     C  CC P+P    T A C  GC
Sbjct: 50  RQWGCGCDCWGCCGPTPDPAATPAPCNCGC 79


>U80952-3|AAB38093.1|  279|Caenorhabditis elegans Hypothetical
           protein F54H5.3 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 494 VDLSVMVQTDNQHGSHRVKNTITQYTNELFHTQNSRCSLGTRINND 357
           VDL    Q  N+  S RVK    QY+N + H ++ R  LG   NN+
Sbjct: 229 VDLDRQAQLVNEL-SERVKRGEIQYSNLVMHERSLRVELGRLKNNE 273


>U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family
           protein 2 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
 Frame = +3

Query: 513 EDGTFVS*WKDVDCGSSVSAAQ-HVATRVPARRPPQPLASQAAPGQSSNSSNGQKEKP*I 689
           E+  F   ++D   G      Q H       + PP   AS        + SN + ++P +
Sbjct: 233 ENNPFAKGFRDAGAGKREKKRQLHRMNGDATQSPPGKTASLPTHSPHPSESNSEDDEPTL 292

Query: 690 SGTEPGPAITHHTTTPKLLISKTTDSLNTECPR*SDQ 800
              +P P+    T T   L + TT +L+   P  S Q
Sbjct: 293 KKCKPEPS---QTPTTSSLSTSTTPTLSAHHPLRSPQ 326


>AF077537-13|AAC26282.1|  190|Caenorhabditis elegans Hypothetical
           protein F16G10.1 protein.
          Length = 190

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 618 PLASQAAPGQSSNSSNGQKEKP*ISGTEPG----PAITHHTTTPKLLISKTTDSLNTECP 785
           P  S  AP +++ +S    E P +S   PG    P  +  T  P+L+  +   +  T+CP
Sbjct: 17  PEESTMAPRETTMASGENTEAPEMSTMAPGDMSTPETSEETEAPELISGEVCPTSTTKCP 76


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 609 PPQPLASQAAPGQSSNSSNGQKEKP*ISGTEPGP 710
           PP P  S  APG+     +    +P I G EPGP
Sbjct: 193 PPGPPGSPGAPGEPGRPGDDAPSEPLIPG-EPGP 225


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 558 SSVSAAQHVATRVPARRP-PQPLAS-QAAPGQSSNSSNGQKEKP*ISGTEPGPAITHHTT 731
           +  + AQ  +T  P+  P PQ  +S QAAP   ++ +N Q   P  S   P PA    +T
Sbjct: 570 AQAAQAQQASTPAPSTTPAPQAASSSQAAP---TSGANTQPATPSASNQPPTPASASAST 626

Query: 732 T 734
           T
Sbjct: 627 T 627


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,305,731
Number of Sequences: 27780
Number of extensions: 427311
Number of successful extensions: 1240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)