Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O13
         (1060 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.12 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 486 PPPPXXXXGGGGPPPXPP 433
           PPPP     G GPPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 486 PPPPXXXXGGGGPPPXPP 433
           PPPP    G G PPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 486 PPPPXXXXGGGGPPPXPP 433
           PPPP     G  PPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 483 PPPXXXXGGGGPPPXPP 433
           PPP    GG  PPP PP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 486 PPPPXXXXGGGGPPPXPP 433
           P PP     GG PPP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 765 PPPPPPP 785
           PPPPPPP
Sbjct: 762 PPPPPPP 768



 Score = 21.4 bits (43), Expect(2) = 4.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 753 LXXXPPPPPP 782
           L   PPPPPP
Sbjct: 728 LLKSPPPPPP 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,321
Number of Sequences: 5004
Number of extensions: 21668
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)