Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_O11
(987 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 104 4e-22
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 104 4e-22
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 104 4e-22
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 104 4e-22
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 104 4e-22
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 104 4e-22
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 104 4e-22
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 104 4e-22
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 104 4e-22
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 104 4e-22
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 104 4e-22
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 103 1e-21
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 101 4e-21
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 101 4e-21
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 101 4e-21
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 101 4e-21
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 101 4e-21
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 101 4e-21
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 101 4e-21
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 101 4e-21
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 101 4e-21
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 101 4e-21
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 101 5e-21
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 101 5e-21
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 99 1e-20
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 67 1e-10
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 67 1e-10
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 38 0.057
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 38 0.057
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 38 0.057
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 38 0.057
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 38 0.057
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 36 0.23
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 36 0.23
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 36 0.23
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 36 0.23
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 36 0.23
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 36 0.23
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 36 0.23
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 35 0.40
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 35 0.40
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 35 0.40
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 35 0.40
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 35 0.40
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 31 8.6
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 31 8.6
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 31 8.6
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 31 8.6
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 31 8.6
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 20 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 79
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 80 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 139
Query: 587 RGQLSA 604
RG ++A
Sbjct: 140 RGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 20 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 79
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 80 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 139
Query: 587 RGQLSA 604
RG ++A
Sbjct: 140 RGTVAA 145
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 104 bits (250), Expect = 4e-22
Identities = 60/126 (47%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 103 bits (246), Expect = 1e-21
Identities = 59/126 (46%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 5 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 64
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 65 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 124
Query: 587 RGQLSA 604
RG ++A
Sbjct: 125 RGTVAA 130
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 101 bits (242), Expect = 4e-21
Identities = 58/126 (46%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 101 bits (241), Expect = 5e-21
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 101 bits (241), Expect = 5e-21
Identities = 46/56 (82%), Positives = 51/56 (91%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 99 bits (238), Expect = 1e-20
Identities = 58/126 (46%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI---- 406
FIGTFKAFDKHMNLIL DC EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 27 FIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPP 86
Query: 407 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGN 586
RGVGGPSQQ M P
Sbjct: 87 PKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQG 146
Query: 587 RGQLSA 604
RG ++A
Sbjct: 147 RGTVAA 152
Score = 36.7 bits (81), Expect = 0.13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
MT GK++K QHI+YR+R ILQ R F +F
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAF 34
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 66.9 bits (156), Expect = 1e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 364
FIGTFKAFDKHMN+I DC+EFRK+K KN+K REEKR G
Sbjct: 67 FIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPAREEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 66.9 bits (156), Expect = 1e-10
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = +2
Query: 239 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 364
FIGTFKAFDKHMN+I DC+EFRK+K KN+K REEKR G
Sbjct: 67 FIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPAREEKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.057
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 236 TFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
T +G F D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 62 TLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.057
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 236 TFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
T +G F D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 62 TLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 37.9 bits (84), Expect = 0.057
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 236 TFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
T +G F D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 110 TLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.057
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 236 TFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
T +G F D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 62 TLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.057
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 236 TFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
T +G F D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 62 TLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 35 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 85
Query: 395 SL 400
L
Sbjct: 86 LL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 35 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 85
Query: 395 SL 400
L
Sbjct: 86 LL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 35 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 85
Query: 395 SL 400
L
Sbjct: 86 LL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 24 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 74
Query: 395 SL 400
L
Sbjct: 75 LL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 35 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 85
Query: 395 SL 400
L
Sbjct: 86 LL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 35 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 85
Query: 395 SL 400
L
Sbjct: 86 LL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 215 LYYKXLXTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
LY + G FD++MNL+L D EE +SKT R++ LG ++L+G+NI
Sbjct: 35 LYEQVNMQIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNIT 85
Query: 395 SL 400
L
Sbjct: 86 LL 87
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.40
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 245 GTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
G A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 41 GRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.40
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 245 GTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
G A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 41 GRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.40
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 245 GTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
G A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 41 GRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.40
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 245 GTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
G A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 41 GRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.40
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 245 GTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
G A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 41 GRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 30.7 bits (66), Expect = 8.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
+GT K FD+ +NLIL + E R S E+ LG ++RG+N+
Sbjct: 24 VGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLGLYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 30.7 bits (66), Expect = 8.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
+GT K FD+ +NLIL + E R S E+ LG ++RG+N+
Sbjct: 24 VGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLGLYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 30.7 bits (66), Expect = 8.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
+GT K FD+ +NLIL + E R S E+ LG ++RG+N+
Sbjct: 24 VGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLGLYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 30.7 bits (66), Expect = 8.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
+GT K FD+ +NLIL + E R S E+ LG ++RG+N+
Sbjct: 24 VGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLGLYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 30.7 bits (66), Expect = 8.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
+GT K FD+ +NLIL + E R S E+ LG ++RG+N+
Sbjct: 24 VGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLGLYIVRGDNV 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,482,576
Number of Sequences: 237096
Number of extensions: 1076206
Number of successful extensions: 2067
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13213860436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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