Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O11
         (987 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    85   1e-16
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    36   0.044
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    36   0.059
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    28   8.9  

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 84.6 bits (200), Expect = 1e-16
 Identities = 38/57 (66%), Positives = 46/57 (80%)
 Frame = +2

Query: 236 TFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 406
           TFIG FKAFDKHMN++L +CEE R+IK K  K  D EEKR LG VL+RGE+IVS+T+
Sbjct: 26  TFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTV 82



 Score = 36.7 bits (81), Expect = 0.025
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 160 MTXGKNNKXQQHINYRVRVILQXSRYIYWNF*SF 261
           MT  KNNK   H+NYR+++ILQ  R     F +F
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAF 34


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 245 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
           G  + FD+ +N++L DC E+ +     S   D  E R LG ++ RG  I
Sbjct: 36  GVLRGFDQLLNMVLDDCREYLRDPQNPSVVGD--ETRQLGLIVARGTAI 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +2

Query: 245 GTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 394
           G  +AFD+H+N++L + EE    R++     +   ++ KR +  + +RG++++
Sbjct: 41  GRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPMLFVRGDSVI 93


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 400
           +GT   FD ++N++L D  E+         TAD +    L  +LL G +I  L
Sbjct: 37  VGTLTGFDDYVNMVLEDVVEY-------ENTADGKRMTKLDTILLNGNHITML 82


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 242 IGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGFVLLRGENIV 394
           +G  KAFD+H N++L + +E      K      K     + R +  + LRG++++
Sbjct: 53  LGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVI 107


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 242 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 391
           +G  K FD+ +NL++ D  E    +++   T        LG  ++RGEN+
Sbjct: 24  VGLLKGFDQLINLVIEDAHERSYSETEGVLTT------PLGLYIIRGENV 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,272
Number of Sequences: 27780
Number of extensions: 172548
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)