Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_O10
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 59 9e-10
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 31 0.22
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 29 0.66
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 29 0.66
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 29 0.87
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.2
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 28 2.0
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 6.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 8.1
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 58.8 bits (136), Expect = 9e-10
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = +3
Query: 225 AFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRTLGFVLLRGENIVSLTI 374
AFD MNL+L DC+E+R IK +N + EEKR LG V+LRGE IVSL++
Sbjct: 30 AFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIVSLSV 80
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 225 AFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGFVLLRGENIV 362
A+D+H+N++LGD EE I D+ K + + +RG++++
Sbjct: 38 AYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVI 86
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 359
+ FD+ MN++L D + + +KN+K R LG +LL+G+NI
Sbjct: 43 RGFDEFMNIVLDDAVQ---VDAKNNK-------RELGRILLKGDNI 78
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
K FD+ MNL+L D EE + T R LG V++RG +V
Sbjct: 51 KGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLGLVVVRGTTLV 94
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 29.1 bits (62), Expect = 0.87
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEF---RKIKSKNSKTADREEKRTLGFVLLRGENIV 362
KAFD+H N++L + +E +K + K + R + + LRG+ +V
Sbjct: 58 KAFDRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVV 107
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = -2
Query: 723 INHKSLHCT*TNSVAFLEDPVLAHHDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHDF-L 547
I+ ++ T T++V + + A+ + C + L ++E GL+A E+ + V+ F L
Sbjct: 86 ISPRNRSLTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIA-EQSEHVEKAFNL 144
Query: 546 VPCVVEMARLLLWQDLEDPEVL 481
+ V+ +A D++ PE+L
Sbjct: 145 LRQVLSVALKAQKPDMDSPELL 166
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 359
K FD NLIL D F +I S + E LG LLRGEN+
Sbjct: 26 KGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGENV 65
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 612 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 445
+GH SW + F+ + D ++ + V +LLLW D + RP +Y + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -2
Query: 645 PCQEELPSFLEEGHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLR 478
P ++ELP+ L P G LAF +++ V + + V + A+L + +L + ++LR
Sbjct: 329 PLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTI-AELRERKILR 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,924
Number of Sequences: 5004
Number of extensions: 47749
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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