Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O10
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           78   1e-14
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     40   0.003
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140...    33   0.30 
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    33   0.40 
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    29   3.7  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 36/52 (69%), Positives = 46/52 (88%), Gaps = 2/52 (3%)
 Frame = +3

Query: 225 AFDKHMNLILGDCEEFRKI-KSKNSK-TADREEKRTLGFVLLRGENIVSLTI 374
           AFD+HMNL+LGDCEEFRK+  SK+SK T +REE+RTLG +LLRGE +VS+T+
Sbjct: 33  AFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREERRTLGLLLLRGEEVVSMTV 84


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +3

Query: 225 AFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGFVLLRGENIV 362
           A+D+H+N+ILGD EE       + +T +   R  KRT+ F+ +RG+ ++
Sbjct: 47  AYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVI 95


>02_01_0209 -
           1399613-1399622,1399719-1399764,1399849-1399927,
           1400004-1400162,1400988-1401050,1401154-1401222
          Length = 141

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = +3

Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 359
           K FD++MNL+L + EE   IK        ++ +++LG +LL+G+NI
Sbjct: 97  KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +3

Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 359
           FD++MNL+L D EE       N K   ++ +++LG +LL+G+NI
Sbjct: 37  FDEYMNLVLDDAEEI------NVK---KDTRKSLGRILLKGDNI 71


>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 554 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 655
           SW+  C   +   P +   +++ND    WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,565
Number of Sequences: 37544
Number of extensions: 277264
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)