Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_O10
(880 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 94 7e-19
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 94 7e-19
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 94 7e-19
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 94 7e-19
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 94 7e-19
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 94 7e-19
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 94 7e-19
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 94 7e-19
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 94 7e-19
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 94 7e-19
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 94 7e-19
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 92 2e-18
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 91 6e-18
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 91 6e-18
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 91 6e-18
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 91 6e-18
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 91 6e-18
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 91 6e-18
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 91 6e-18
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 91 6e-18
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 91 6e-18
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 91 6e-18
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 90 8e-18
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 90 8e-18
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 89 2e-17
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 56 2e-07
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 56 2e-07
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 35 0.45
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 35 0.45
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 35 0.45
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 35 0.45
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 35 0.45
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 35 0.45
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 35 0.45
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 1.0
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 33 1.0
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 33 1.0
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 33 1.0
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 33 1.0
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 33 1.0
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 32 3.2
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 32 3.2
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 32 3.2
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 32 3.2
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 32 3.2
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 7.3
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 7.3
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 25 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 84
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 85 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 144
Query: 570 A 572
A
Sbjct: 145 A 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 25 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 84
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 85 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 144
Query: 570 A 572
A
Sbjct: 145 A 145
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/121 (45%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 92.3 bits (219), Expect = 2e-18
Identities = 54/121 (44%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KNS+ A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 10 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 69
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 70 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 129
Query: 570 A 572
A
Sbjct: 130 A 130
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/121 (43%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 90.2 bits (214), Expect = 8e-18
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 90.2 bits (214), Expect = 8e-18
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
KAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 89.0 bits (211), Expect = 2e-17
Identities = 53/121 (43%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI----XXXXX 389
KAFDKHMNLIL DC EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 32 KAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG 91
Query: 390 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAPGNRGQLS 569
RGVGGPSQQ M P RG ++
Sbjct: 92 IARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVA 151
Query: 570 A 572
A
Sbjct: 152 A 152
Score = 33.5 bits (73), Expect = 1.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 127 MTIGKNNKMQQHINYRVRVI 186
MT+GK++KM QHI+YR+R I
Sbjct: 1 MTVGKSSKMLQHIDYRMRCI 20
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 56.0 bits (129), Expect = 2e-07
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 332
KAFDKHMN+I DC+EFRK+K KN+K REEKR G
Sbjct: 72 KAFDKHMNMIPCDCDEFRKMKLKNAKQPAREEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 56.0 bits (129), Expect = 2e-07
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +3
Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 332
KAFDKHMN+I DC+EFRK+K KN+K REEKR G
Sbjct: 72 KAFDKHMNMIPCDCDEFRKMKLKNAKQPAREEKRVSG 108
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 39 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.45
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 228 FDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 368
FD++MNL+L D EE +SKT R++ LG ++L+G+NI L
Sbjct: 50 FDEYMNLVLDDAEEI------HSKTKSRKQ---LGRIMLKGDNITLL 87
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 1.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 548 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 652
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 33.5 bits (73), Expect = 1.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 225 AFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 45 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 33.5 bits (73), Expect = 1.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 225 AFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 45 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 33.5 bits (73), Expect = 1.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 225 AFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 45 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 33.5 bits (73), Expect = 1.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 225 AFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 45 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 33.5 bits (73), Expect = 1.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 225 AFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
A+D+H+N+ILGD EE +I + + + KR + + +RG+ +V
Sbjct: 45 AYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 231 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 71 DRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 231 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 71 DRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 231 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 119 DRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 231 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 71 DRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 31.9 bits (69), Expect = 3.2
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 231 DKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
D+ N+ILG +EF +K +S +A E R LG ++ G +IVS+ +
Sbjct: 71 DRDCNVILGSAQEF--LKPSDSFSAG--EPRVLGLAMVPGHHIVSIEV 114
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.7 bits (66), Expect = 7.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 536 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 685
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.7 bits (66), Expect = 7.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 536 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 685
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,952,307
Number of Sequences: 237096
Number of extensions: 1599348
Number of successful extensions: 3382
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3375
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -