Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O10
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    75   9e-14
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    33   0.20 

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 33/51 (64%), Positives = 41/51 (80%)
 Frame = +3

Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 374
           KAFDKHMN++L +CEE R+IK K  K  D EEKR LG VL+RGE+IVS+T+
Sbjct: 32  KAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTV 82



 Score = 35.5 bits (78), Expect = 0.050
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +1

Query: 127 MTIGKNNKMQQHINYRVRVI 186
           MTI KNNKM  H+NYR+++I
Sbjct: 1   MTISKNNKMMAHLNYRMKII 20


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 222 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 359
           + FD+ +N++L DC E+ +     S   D  E R LG ++ RG  I
Sbjct: 39  RGFDQLLNMVLDDCREYLRDPQNPSVVGD--ETRQLGLIVARGTAI 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/50 (26%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = +3

Query: 222 KAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGFVLLRGENIV 362
           +AFD+H+N++L + EE    R++     +   ++ KR +  + +RG++++
Sbjct: 44  RAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPMLFVRGDSVI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,004
Number of Sequences: 27780
Number of extensions: 262927
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)