Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O08
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0034 - 6246183-6246553,6246672-6249699                           31   1.3  
01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707     29   3.8  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    29   5.1  
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    29   6.7  
02_02_0032 - 6227556-6227926,6228322-6231085                           29   6.7  
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993     28   8.8  

>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 533 CSEARPVQGDTKTQRQAVASLWFGIADVHGRLWSFTNRRAVFC 661
           CS    +  DT T R+A+      I+D +G L S+TN    FC
Sbjct: 22  CSLPLAISDDTDTDREALLCFKSQISDPNGALSSWTNTSQNFC 64


>01_05_0298 + 20591470-20591892,20592696-20592892,20594446-20594707
          Length = 293

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 195 AXCCRVCSFXTCQATSSGSGMKKEXKIWRGRPSLPHLLG 311
           A CC VC+     ++SS S  KK  +  + RP  P   G
Sbjct: 14  AVCCLVCAVWAFSSSSSSSASKKHQRQRQQRPLSPGCCG 52


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 549 PCKGTRRPNDRQWLLCGLELLMSMDDCGHLPTGEPYSAFH-VCVG 680
           P KG+  P  R  L      L+  ++C + P G P  + H  CVG
Sbjct: 383 PSKGSESPISRVDLFVDNNKLLLEEECHNKPAGHPLQSNHEACVG 427


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 398 NVSLPHHILTIASTISFHWLKKMTNKHNHQSCLG*ARSSSPGRGDCSEARPVQGDT 565
           N  LP+ I  + S  +  W   + N  ++  CLG   +    + DCS + P++  T
Sbjct: 643 NTVLPNGIGDLKSLRNLEWFDLIKNSMSNIECLGELTNLRDLKLDCSSSEPLEDVT 698


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 551 VQGDTKTQRQAVASLWFGIADVHGRLWSFTNRRAVFC 661
           +  DT T R+A+      I+D +G L S+TN    FC
Sbjct: 28  ISDDTDTDREALLCFKSQISDPNGALSSWTNTSLNFC 64


>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
          Length = 1125

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -1

Query: 578 VVGSSCPLARVGLQSSLLCPGLNSLPNRGRTDDYACWSFS*ANEMIWLKRWLRCDEVMRH 399
           V+  S P   +G +  ++   LNS+  + R DD   + +     + ++  WL CD+V R 
Sbjct: 391 VIRKSIPKNDLGSRI-IMTTRLNSIAEKCRNDDMDAFVYE-TEALDYVDAWLLCDKVARK 448

Query: 398 S 396
           S
Sbjct: 449 S 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,137,784
Number of Sequences: 37544
Number of extensions: 464407
Number of successful extensions: 1062
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)