Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O07
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   5.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.6  
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    26   8.7  

>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -2

Query: 190 QKKKTIACVSLEHRRRTQKPRRSKKSLLTTSGIAQRPRQASASA 59
           Q+KK +A +  + +RR  +      S+  T+   ++P+ A++S+
Sbjct: 114 QRKKILAEIERDKKRRAAERENKNSSVKETAAPIKQPKNANSSS 157


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 493 ASSTRLAVTLDDSVSQ*SCIQTSDRKRLEQLTRKKNLMES 374
           ASST   + L  +  + + +QT+    L++LT+K +++E+
Sbjct: 165 ASSTHQVLELQHTQQEKASLQTNYEFELQKLTQKNSILEN 204


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 151 RRRTQKPRRSKKSLLTTSGIAQRPRQASASAI 56
           RR  Q    S    L  SGIA+R R  S SAI
Sbjct: 22  RRNGQARNASLAKTLHDSGIAERARSPSGSAI 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,280
Number of Sequences: 5004
Number of extensions: 64545
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)