Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O01
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    28   1.6  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.7  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   3.7  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   3.7  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   8.5  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    26   8.5  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 747 GVYHSMPYLIHLPLPPEPNLFLWSSADVFLQRTGSTGMFAVSVHD 613
           G +   P    L  PPE + F   + D +  +  STG+FA  V D
Sbjct: 5   GEHIEYPNTPPLHSPPESHTFSSQTDDSYFHKPSSTGLFATLVAD 49


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 665 YFYSVPAALACSQSPSMIVHSSIAAQAQLP 576
           + + + AAL CS  PS +  +S+ + A +P
Sbjct: 398 FIFLISAALLCSNLPSAVAFTSLLSAAAVP 427


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 608 ARSWTETANMPVLPVRCKNTS 670
           A+SW  TA+ P+LP   KN S
Sbjct: 290 AKSWNHTASAPLLPPGLKNGS 310


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 699 EPNLFLWSSADVFLQRTGST--GMFAVSVHDRALI 601
           EP LFL  S D  +QR  S   G  AV+  ++AL+
Sbjct: 88  EPVLFLLQSPDAEIQRAASVALGNLAVNAENKALV 122


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 434 DHLPHFKPMICVDNGFISGGPVSDELKATHIVIQNPPSPTRTNCED 571
           D LP F     VD+ +     VSD +      +QNP +P R + ED
Sbjct: 200 DPLPSFPSPYMVDDYYTQDVFVSDNVNDYSYGVQNPTNP-RLSVED 244


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 571 CGGSCACAAIDECTIMDGDCEHA 639
           C  +   AA  ECT+  G C HA
Sbjct: 55  CQANTDSAAAQECTVAWGTCNHA 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,750
Number of Sequences: 5004
Number of extensions: 62838
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)