Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_O01
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   3.5  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    29   3.5  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   3.5  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   3.5  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    29   3.5  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   3.5  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    28   8.0  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    28   8.0  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      28   8.0  
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical
           protein C44F1.2 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +2

Query: 605 SARSWTETA--NMPVLPVRCKNTSAELHKNKFGSGG-RGRCIKYGIEWYTPSEFEAL 766
           S   WT     N   +PV C      +H   F   G R  CI+Y  ++ TP +F  L
Sbjct: 61  SEHIWTPIVPLNATTVPVTCGYVKGIMHLKLFRCPGIRQACIEYESQYLTPKQFTEL 117


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229  PXITEVSEAXPLSTAPEHXNERVEGTSVLSTTIKNTRLSN 348
            P +  + +  P+ T   H   +VEG+   S TIK+ RL +
Sbjct: 3315 PSVEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLED 3354


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229  PXITEVSEAXPLSTAPEHXNERVEGTSVLSTTIKNTRLSN 348
            P +  + +  P+ T   H   +VEG+   S TIK+ RL +
Sbjct: 2675 PSVEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLED 2714


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229  PXITEVSEAXPLSTAPEHXNERVEGTSVLSTTIKNTRLSN 348
            P +  + +  P+ T   H   +VEG+   S TIK+ RL +
Sbjct: 3315 PSVEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLED 3354


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229  PXITEVSEAXPLSTAPEHXNERVEGTSVLSTTIKNTRLSN 348
            P +  + +  P+ T   H   +VEG+   S TIK+ RL +
Sbjct: 3315 PSVEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLED 3354


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229  PXITEVSEAXPLSTAPEHXNERVEGTSVLSTTIKNTRLSN 348
            P +  + +  P+ T   H   +VEG+   S TIK+ RL +
Sbjct: 2675 PSVEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLED 2714


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229  PXITEVSEAXPLSTAPEHXNERVEGTSVLSTTIKNTRLSN 348
            P +  + +  P+ T   H   +VEG+   S TIK+ RL +
Sbjct: 3315 PSVEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLED 3354


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 566 EDXXXXXXXXRSMSARSWTETANMPVLPVRCKNTSAELHKNKFGSGGRGRCIKYGIEWYT 745
           ED        R     ++  +   P++ V   +T  ELH N   + G G    Y I++Y+
Sbjct: 513 EDHTSNAQFVRMPDPSNFPSSPTQPII-VNVTDTEVELHWNAPSTSGAGPITGYIIQYYS 571

Query: 746 P 748
           P
Sbjct: 572 P 572


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 566 EDXXXXXXXXRSMSARSWTETANMPVLPVRCKNTSAELHKNKFGSGGRGRCIKYGIEWYT 745
           ED        R     ++  +   P++ V   +T  ELH N   + G G    Y I++Y+
Sbjct: 513 EDHTSNAQFVRMPDPSNFPSSPTQPII-VNVTDTEVELHWNAPSTSGAGPITGYIIQYYS 571

Query: 746 P 748
           P
Sbjct: 572 P 572


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 566 EDXXXXXXXXRSMSARSWTETANMPVLPVRCKNTSAELHKNKFGSGGRGRCIKYGIEWYT 745
           ED        R     ++  +   P++ V   +T  ELH N   + G G    Y I++Y+
Sbjct: 513 EDHTSNAQFVRMPDPSNFPSSPTQPII-VNVTDTEVELHWNAPSTSGAGPITGYIIQYYS 571

Query: 746 P 748
           P
Sbjct: 572 P 572


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 286 NERVEGTSVLSTTIKNTRLSNDSNGVVTVPVSFASW 393
           + ++E T  +S      +L N ++G   +PVSF SW
Sbjct: 79  SSQLEPTETVSVVFSTEQLYNVASGKWKLPVSFGSW 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,878,670
Number of Sequences: 27780
Number of extensions: 383412
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)