Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N24
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...   165   1e-41
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.90 
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    28   1.6  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.3  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score =  165 bits (400), Expect = 1e-41
 Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 9/218 (4%)
 Frame = +3

Query: 255 YLSISHQKDLQTLLQKKCPHKLDVGAAYNTKP----SVGRHDAVVISRELVFDIDLTDYD 422
           YLS S+ ++L+      CP + +VG  Y+  P    ++ +     + +ELVFDID+TDYD
Sbjct: 79  YLSFSNWEELKKEALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYD 138

Query: 423 EIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEART 602
           ++RTCC +  +CEKCW F+ IA +++D    +DFGF+ ILWV+SGRRGIH W+ D  A +
Sbjct: 139 DVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACS 198

Query: 603 LDSPGRGAIADYLCLIVGG-ENQSKKVHLGNENLHSSIRRALNIIDKYFEQL-LQDQE-F 773
           LD   R  IA YL ++VG  +   + ++     LH  + R+LNI+   F ++ L+DQ+ +
Sbjct: 199 LDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPW 258

Query: 774 LATDKLNSFLKLIPDDALXHRL-KHFEKN-AGXSLNKW 881
            + +   + LKL+PD  L   L K +E +    S NKW
Sbjct: 259 ASKEGAENLLKLLPDKDLASALRKKWEVDPERSSKNKW 296


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 453 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 557
           +C  C K   I   ++   L +  GF ++LW+F G
Sbjct: 497 ICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFG 531


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 657 GENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
           G ++ + +HL   +L   ++ A   I+       +D EFL +DK+++ +K I D+
Sbjct: 181 GLSRDETIHLAVSSLLEVVQTASGNIELAIMDPGKDVEFLHSDKIDTIVKEIQDE 235


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 742 YLSIIFKARLILECKF--SLPRCTFLLWFSP 656
           Y SI   + +   C +  ++P C  LLWF P
Sbjct: 335 YFSIYKMSDMAASCTYMAAMPACVILLWFEP 365


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 530 EPEVIF*SFINDFTCNNHKFPAFFTH 453
           +P+V + + ++DF+C+ + FP   +H
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSH 588


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 495 IIDKALKDDFGFQSIL-WVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 638
           I+DK ++  FGF S+L   FS  R        +EA   DS G G +A Y
Sbjct: 399 ILDKPVESVFGFISVLPGAFSAYR--------FEALQNDSQGNGPLASY 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,691,130
Number of Sequences: 5004
Number of extensions: 78093
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)