Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N24
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722...    48   8e-06
02_05_0808 - 31883413-31883813,31883903-31884377                       33   0.41 
01_01_0594 + 4420381-4421898                                           30   2.9  
11_04_0339 - 16527602-16527742,16528622-16528800,16529617-165296...    29   5.0  

>05_03_0678 -
           16871481-16871620,16871836-16871881,16872170-16872243,
           16872495-16872552,16872640-16872702,16872891-16873012,
           16873132-16873247,16873367-16873428,16873497-16873589,
           16874061-16874138,16874248-16874423,16874500-16874550,
           16874964-16875078
          Length = 397

 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
 Frame = +3

Query: 603 LDSPGRGAIADYLCLI-VGGENQSKKVHLGNENLHSSIRRA-LNIIDKYFEQ--LLQDQE 770
           L++  R AIADY  +  VGGEN  KKV L    LH  + R+  +++  +FE   LL  Q 
Sbjct: 154 LNNEQRAAIADYFRVYKVGGENTMKKVSLTGAVLHPFLARSYTDVLKGFFEDKLLLSQQL 213

Query: 771 FLATDKLNSFLKLIPDDALXHRL-KHFEKNAGXSLNK 878
           F + ++    L LIPD+ +   L   ++ N   S++K
Sbjct: 214 FASEERYQKILDLIPDENVASELHDKWQGNRRSSISK 250



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
 Frame = +3

Query: 228 FXLTMSTSXYL---SISHQKDLQTLLQKKCPHKLDVGAAYNTKPS-------VGRHDAVV 377
           F  T+    Y+   S     +++  +++KCP K+D+G  Y+  P+        G +  V 
Sbjct: 72  FSFTLENDIYVRFQSFDSVAEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVP 131

Query: 378 ISRELVFDI 404
           + REL+FDI
Sbjct: 132 VERELIFDI 140


>02_05_0808 - 31883413-31883813,31883903-31884377
          Length = 291

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 216 FSVTERLRRTTAS*PSTRIYFAEIAWHSKWVAYQIECFHCVRQS 85
           FSVT  L       PST +  A +AW ++W A ++   H +RQS
Sbjct: 124 FSVTLELHARLWKTPSTLVAVAALAWSARWCATKLG-VHSIRQS 166


>01_01_0594 + 4420381-4421898
          Length = 505

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 130 LTMPGNFRKIYSCRWLACGSSPQPLCNRELSFTLX*RCLPPXICRFRIKRIYKP 291
           LT  G FR   SC++ A    P+    R+L+F      +   + RFR+     P
Sbjct: 427 LTPAGRFRHERSCKFAAFNVGPRTCLGRDLAFAQMKAVVAAVVPRFRVAAAAAP 480


>11_04_0339 -
           16527602-16527742,16528622-16528800,16529617-16529680,
           16530357-16530475,16530560-16530686,16530937-16531149,
           16531462-16531500
          Length = 293

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 568 IPRRPENTHRMLWNPKSSFKALSMISHAITINFQHFSHT 452
           I +R +   R++W  K    ALS ISHA  IN   F+ T
Sbjct: 71  ISKRKDEYVRIMW--KQEINALSSISHANVINLVGFADT 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,093,203
Number of Sequences: 37544
Number of extensions: 449711
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)