Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N24
(897 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK223391-1|BAD97111.1| 420|Homo sapiens DNA primase small subun... 202 1e-51
X74330-1|CAA52377.1| 420|Homo sapiens DNA primase (subunit p48)... 202 2e-51
BC005266-1|AAH05266.1| 420|Homo sapiens primase, polypeptide 1,... 202 2e-51
U89689-1|AAC51726.1| 50|Homo sapiens DNA primase 1 protein. 69 3e-11
U40622-1|AAC50339.1| 334|Homo sapiens XRCC4 protein. 33 1.9
BT007216-1|AAP35880.1| 310|Homo sapiens X-ray repair complement... 33 1.9
BC016314-1|AAH16314.1| 336|Homo sapiens X-ray repair complement... 33 1.9
BC005259-1|AAH05259.1| 310|Homo sapiens XRCC4 protein protein. 33 1.9
AY940097-1|AAX14046.1| 334|Homo sapiens X-ray repair complement... 33 1.9
AF055285-2|AAD47297.1| 334|Homo sapiens DNA repair protein XRCC... 33 1.9
AF055285-1|AAD47298.1| 336|Homo sapiens DNA repair protein XRCC... 33 1.9
AB017445-1|BAB20668.1| 336|Homo sapiens XRCC4 protein. 33 1.9
Z35309-1|CAA84552.1| 1251|Homo sapiens adenylyl cyclase protein. 31 4.3
M83533-1|AAA35523.2| 675|Homo sapiens adenylyl cyclase type V p... 31 4.3
DQ104739-1|AAZ13596.1| 1120|Homo sapiens brain adenylate cyclase... 31 4.3
>AK223391-1|BAD97111.1| 420|Homo sapiens DNA primase small subunit,
49kDa variant protein.
Length = 420
Score = 202 bits (494), Expect = 1e-51
Identities = 107/273 (39%), Positives = 158/273 (57%), Gaps = 8/273 (2%)
Frame = +3
Query: 99 NENILSDMLPTYYARQFPQNIFL*MASLR*FASTAL*QRIIIYFXLTMSTSXYLSISHQK 278
N L ++L YY R FP + + + R + Y S ++Q
Sbjct: 5 NPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQS 64
Query: 279 DLQTLLQKKCPHKLDVGAAYNTKPSVGRHDAVVIS------RELVFDIDLTDYDEIRTCC 440
DL+ +QK P+K+D+GA Y+ +P+ +H+ V + +ELVFDID+TDYD++R CC
Sbjct: 65 DLEKEMQKMNPYKIDIGAVYSHRPN--QHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCC 122
Query: 441 QEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGR 620
A +C KCW M +A IID+ALK+DFGF+ LWV+SGRRG+HCWV D R L S R
Sbjct: 123 SSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVR 182
Query: 621 GAIADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQ-LLQDQEFLAT-DKLN 794
I +YL L+ GG++ KKVHL +E +H IR+++NII KYFE+ L +Q+ L + +
Sbjct: 183 SGIVEYLSLVKGGQDVKKKVHL-SEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWD 241
Query: 795 SFLKLIPDDALXHRLKHFEKNAGXSLNKWKLYK 893
L L+P+ + F+K+ SL +W+ K
Sbjct: 242 KILALVPETIHDELQQSFQKSHN-SLQRWEHLK 273
>X74330-1|CAA52377.1| 420|Homo sapiens DNA primase (subunit p48)
protein.
Length = 420
Score = 202 bits (492), Expect = 2e-51
Identities = 106/269 (39%), Positives = 157/269 (58%), Gaps = 8/269 (2%)
Frame = +3
Query: 111 LSDMLPTYYARQFPQNIFL*MASLR*FASTAL*QRIIIYFXLTMSTSXYLSISHQKDLQT 290
L ++L YY R FP + + + R + Y S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 291 LLQKKCPHKLDVGAAYNTKPSVGRHDAVVIS------RELVFDIDLTDYDEIRTCCQEAR 452
+QK P+K+D+GA Y+ +P+ +H+ V + +ELVFDID+TDYD++R CC A
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN--QHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSAD 126
Query: 453 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 632
+C KCW M +A IID+ALK+DFGF+ LWV+SGRRG+HCWV D R L S R I
Sbjct: 127 ICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIV 186
Query: 633 DYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQ-LLQDQEFLAT-DKLNSFLK 806
+YL L+ GG++ KKVHL +E +H IR+++NII KYFE+ L +Q+ L + + L
Sbjct: 187 EYLSLVKGGQDVKKKVHL-SEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILA 245
Query: 807 LIPDDALXHRLKHFEKNAGXSLNKWKLYK 893
L+P+ + F+K+ SL +W+ K
Sbjct: 246 LVPETIHDELQQSFQKSHN-SLQRWEHLK 273
>BC005266-1|AAH05266.1| 420|Homo sapiens primase, polypeptide 1,
49kDa protein.
Length = 420
Score = 202 bits (492), Expect = 2e-51
Identities = 106/269 (39%), Positives = 157/269 (58%), Gaps = 8/269 (2%)
Frame = +3
Query: 111 LSDMLPTYYARQFPQNIFL*MASLR*FASTAL*QRIIIYFXLTMSTSXYLSISHQKDLQT 290
L ++L YY R FP + + + R + Y S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 291 LLQKKCPHKLDVGAAYNTKPSVGRHDAVVIS------RELVFDIDLTDYDEIRTCCQEAR 452
+QK P+K+D+GA Y+ +P+ +H+ V + +ELVFDID+TDYD++R CC A
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN--QHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSAD 126
Query: 453 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 632
+C KCW M +A IID+ALK+DFGF+ LWV+SGRRG+HCWV D R L S R I
Sbjct: 127 ICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIV 186
Query: 633 DYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQ-LLQDQEFLAT-DKLNSFLK 806
+YL L+ GG++ KKVHL +E +H IR+++NII KYFE+ L +Q+ L + + L
Sbjct: 187 EYLSLVKGGQDVKKKVHL-SEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILA 245
Query: 807 LIPDDALXHRLKHFEKNAGXSLNKWKLYK 893
L+P+ + F+K+ SL +W+ K
Sbjct: 246 LVPETIHDELQQSFQKSHN-SLQRWEHLK 273
>U89689-1|AAC51726.1| 50|Homo sapiens DNA primase 1 protein.
Length = 50
Score = 68.5 bits (160), Expect = 3e-11
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +3
Query: 384 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKAL 512
+ELVFDID+TDYD++R CC A +C KCW M +A IID+AL
Sbjct: 8 KELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRAL 50
>U40622-1|AAC50339.1| 334|Homo sapiens XRCC4 protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>BT007216-1|AAP35880.1| 310|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 4 protein.
Length = 310
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>BC016314-1|AAH16314.1| 336|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 4 protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>BC005259-1|AAH05259.1| 310|Homo sapiens XRCC4 protein protein.
Length = 310
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>AY940097-1|AAX14046.1| 334|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 4 protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>AF055285-2|AAD47297.1| 334|Homo sapiens DNA repair protein XRCC4
protein.
Length = 334
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>AF055285-1|AAD47298.1| 336|Homo sapiens DNA repair protein XRCC4
protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>AB017445-1|BAB20668.1| 336|Homo sapiens XRCC4 protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 642 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDD 821
CL ENQ+K HL EN + R N + FE+ + +E L TD F+ ++ +
Sbjct: 130 CLDTIAENQAKNEHLQKEN--ERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 187
Query: 822 ALXHRLKH 845
R H
Sbjct: 188 KTKIRSLH 195
>Z35309-1|CAA84552.1| 1251|Homo sapiens adenylyl cyclase protein.
Length = 1251
Score = 31.5 bits (68), Expect = 4.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 78 VKMIGEHNENILSDMLPTYYARQF 149
+K + EHNEN+L ++LP++ AR F
Sbjct: 940 MKELREHNENMLRNILPSHVARHF 963
>M83533-1|AAA35523.2| 675|Homo sapiens adenylyl cyclase type V
protein.
Length = 675
Score = 31.5 bits (68), Expect = 4.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 78 VKMIGEHNENILSDMLPTYYARQF 149
+K + EHNEN+L ++LP++ AR F
Sbjct: 364 MKELREHNENMLRNILPSHVARHF 387
>DQ104739-1|AAZ13596.1| 1120|Homo sapiens brain adenylate cyclase 8
protein.
Length = 1120
Score = 31.5 bits (68), Expect = 4.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 78 VKMIGEHNENILSDMLPTYYARQF 149
+K + EHNEN+L ++LP++ AR F
Sbjct: 809 MKELREHNENMLRNILPSHVARHF 832
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,054,921
Number of Sequences: 237096
Number of extensions: 2571976
Number of successful extensions: 4883
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4877
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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