Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N24
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071217-1|AAL48839.1|  438|Drosophila melanogaster RE26079p pro...   204   1e-52
AE014296-1426|AAF50439.1|  438|Drosophila melanogaster CG7108-PA...   204   1e-52
X79801-1|CAA56196.1|  438|Drosophila melanogaster DNA polymerase...   201   9e-52
AE014297-4250|AAF56803.1| 2119|Drosophila melanogaster CG10011-P...    33   0.70 
AY069771-1|AAL39916.1| 2119|Drosophila melanogaster SD01389p pro...    31   2.8  

>AY071217-1|AAL48839.1|  438|Drosophila melanogaster RE26079p
           protein.
          Length = 438

 Score =  204 bits (498), Expect = 1e-52
 Identities = 109/263 (41%), Positives = 151/263 (57%), Gaps = 9/263 (3%)
 Frame = +3

Query: 96  HNENILSDMLPTYYARQFPQNIFL*MASLR*FASTAL*QRIIIYFXLTMSTSXYLSISHQ 275
           +N  +L DMLP YY R FP   F    S           R I +         YL    Q
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 276 KDLQTLLQKKCPHKLDVGAAYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 446
            +L+  +  + P K+D+G   ++KP   R        + RELVFDID+TDYDE+RTCC  
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 447 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 626
           A VC KCWKFMV+A  ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+AR LD  GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 627 IADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIIDKYFEQL-LQDQEFLATDK-L 791
           +A+YL +I         S +  +G +  H S++RAL I++  FE++ L+DQ    T K +
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMG-DRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGV 261

Query: 792 NSFLKLIPDDALXHRLK-HFEKN 857
              L ++ DDA    L+ + +KN
Sbjct: 262 TKLLNMVHDDAARGELESYMQKN 284


>AE014296-1426|AAF50439.1|  438|Drosophila melanogaster CG7108-PA
           protein.
          Length = 438

 Score =  204 bits (498), Expect = 1e-52
 Identities = 109/263 (41%), Positives = 151/263 (57%), Gaps = 9/263 (3%)
 Frame = +3

Query: 96  HNENILSDMLPTYYARQFPQNIFL*MASLR*FASTAL*QRIIIYFXLTMSTSXYLSISHQ 275
           +N  +L DMLP YY R FP   F    S           R I +         YL    Q
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 276 KDLQTLLQKKCPHKLDVGAAYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 446
            +L+  +  + P K+D+G   ++KP   R        + RELVFDID+TDYDE+RTCC  
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 447 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 626
           A VC KCWKFMV+A  ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+AR LD  GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 627 IADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIIDKYFEQL-LQDQEFLATDK-L 791
           +A+YL +I         S +  +G +  H S++RAL I++  FE++ L+DQ    T K +
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMG-DRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGV 261

Query: 792 NSFLKLIPDDALXHRLK-HFEKN 857
              L ++ DDA    L+ + +KN
Sbjct: 262 TKLLNMVHDDAARGELESYMQKN 284


>X79801-1|CAA56196.1|  438|Drosophila melanogaster DNA polymerase
           subunit A protein.
          Length = 438

 Score =  201 bits (491), Expect = 9e-52
 Identities = 110/263 (41%), Positives = 149/263 (56%), Gaps = 9/263 (3%)
 Frame = +3

Query: 96  HNENILSDMLPTYYARQFPQNIFL*MASLR*FASTAL*QRIIIYFXLTMSTSXYLSISHQ 275
           +N  +L DMLP YY R FP   F    S           R I +         YL    Q
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 276 KDLQTLLQKKCPHKLDVGAAYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 446
            +L+  +  + P K+D+G   ++KP   R        + RELVFDID+TDYDE+RTCC  
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 447 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 626
           A VC KCWKFMV+A  ++D AL +DFGF+ I+W+FSGRRGIHCWV DY+AR LD  GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALAEDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 627 IADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIIDKYFEQL-LQDQEFLATDK-L 791
            A+YL +I         S +  +G +  H SI+RAL I++  FE++ L+DQ    T K +
Sbjct: 203 EAEYLNIITYASFAGGNSPRCSMG-DRPHHSIKRALKIVEPMFEEIVLEDQNLFGTPKGV 261

Query: 792 NSFLKLIPDDALXHRLK-HFEKN 857
              L ++ DDA    L+ + +KN
Sbjct: 262 TKLLNMVHDDAARGELESYMQKN 284


>AE014297-4250|AAF56803.1| 2119|Drosophila melanogaster CG10011-PA
           protein.
          Length = 2119

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = +3

Query: 522 FGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA-DYLCLIVGGENQSKKVHLGNEN 698
           F F+    + S R G    V+D +A   D+ G G         +VGG   S +   G  N
Sbjct: 107 FNFRDSNRLASARNGNPVQVTDLDADEDDAQGDGVDGCGSTSALVGGSKYSSQPSAGTAN 166

Query: 699 LHSSIRRALNIIDKYFEQLLQDQEFLATDKLN-SFLKLIPDD 821
            H   RR LN + K   QL +  E    D  N SF  L  ++
Sbjct: 167 QHLEDRRILNFL-KDTTQLQKKLEITGRDCPNASFSNLAREE 207


>AY069771-1|AAL39916.1| 2119|Drosophila melanogaster SD01389p
           protein.
          Length = 2119

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 552 SGRRGIHCWVSDYEARTLDSPGRGAIA-DYLCLIVGGENQSKKVHLGNENLHSSIRRALN 728
           S R G    V+D +A   D+ G G         +VGG   S +   G  N H   RR LN
Sbjct: 117 SARNGNPVQVTDLDADEDDAQGDGVDGCASTSALVGGSKYSSQPSAGTANQHLEDRRILN 176

Query: 729 IIDKYFEQLLQDQEFLATDKLN-SFLKLIPDD 821
            + K   QL +  E    D  N SF  L  ++
Sbjct: 177 FL-KDTTQLQKKLEITGRDCPNASFSNLAREE 207


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,068,914
Number of Sequences: 53049
Number of extensions: 799111
Number of successful extensions: 1969
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)