Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N22
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   2.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   2.0  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   4.6  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    26   6.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   8.0  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 823 FVLKSFHLFPNFLIKRXSESISDACFMLFSLRSIMW 716
           F+  SFHL PNFL     ES+S      +S+  + W
Sbjct: 395 FLEGSFHLQPNFLAMFTLESVSSWLNAYWSMFHVRW 430


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 319 HTPPISQDNQTIITRPCKNISLSDTIAKSARACSLTVN 206
           H P ++Q+NQ++     +NIS++D   + A++   + +
Sbjct: 434 HAPTMTQENQSLHNESRENISINDITERMAQSTEFSTD 471


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 306 IGGVCGVFILLVIICYCRLMPRHQKSLDEQ 395
           I GV G  I+LVII YC    + +K L EQ
Sbjct: 102 IVGVLGGLIVLVIIFYCLRHFKRKKFLAEQ 131


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 360 LMPRHQKSLDEQYLKENYTIKENHAYSNQDNYRMKHAEVQVQRVSRPAP 506
           LM R      +Q  +EN++     A  +    RM+  E +VQ+  RP P
Sbjct: 125 LMARVLSRSKKQEERENHSSDARDAIKSALRRRMRRREGRVQKALRPTP 173


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 817 LKSFHLFPNFLIKRXSESIS 758
           L SFHLFP FL     ES S
Sbjct: 185 LPSFHLFPQFLSAELFESAS 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,700
Number of Sequences: 5004
Number of extensions: 57984
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)