Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N21
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   1.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   4.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 822 PPPPXPPPP 848
           PPPP PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 813 FXXPPPPXPPP 845
           +  PPPP PPP
Sbjct: 187 YNPPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 822 PPPPXPPPP 848
           P PP PPPP
Sbjct: 236 PAPPPPPPP 244


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 347 KXXPRGEXPPPPPXXXXPP 403
           K  PRG   PPPP    PP
Sbjct: 220 KKVPRGPPSPPPPVLHSPP 238


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 822 PPPPXPPPP 848
           PPPP PPPP
Sbjct: 306 PPPPPPPPP 314


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 822 PPPPXPPPP 848
           PPPP PPPP
Sbjct: 775 PPPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 822 PPPPXPPPP 848
           PPPP PPPP
Sbjct: 945 PPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,861
Number of Sequences: 5004
Number of extensions: 19389
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)