Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N21
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical p...    29   3.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.6  
AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    29   4.6  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   6.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   6.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   6.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   6.1  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   6.1  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   6.1  
AC024838-7|AAF60820.1|  381|Caenorhabditis elegans Hypothetical ...    23   7.1  
AC024838-3|AAF60821.1|  381|Caenorhabditis elegans Hypothetical ...    23   7.1  
U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical pr...    23   7.1  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical
           protein K09H11.11 protein.
          Length = 121

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 356 PRGEXPPPPPXXXXPPXP 409
           P G+ PPPPP    PP P
Sbjct: 8   PPGQQPPPPPPGQQPPHP 25


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 269 PKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPS 412
           P   P K      G G             PR   PPPPP    PP P+
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 285


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 269 PKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPS 412
           P   P K      G G             PR   PPPPP    PP P+
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 306


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 269 PKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPS 412
           P   P K      G G             PR   PPPPP    PP P+
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 291


>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = -2

Query: 517 KKKNXPPFXXXXPGGGGXXXFPPXKXFFFFFXXEXGGXGGXXXXGGGGGXFPP 359
           + +  PP     PGGGG                  GG GG    GGG G FPP
Sbjct: 176 RNRGLPPSNDFGPGGGGGG---------------MGGGGGSGGSGGGSGRFPP 213


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 269 PKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPP 385
           P   P +K +         +L+   K+  P+G  PPPPP
Sbjct: 162 PAIRPPEKSVYENNPIAPSELNVQVKRAPPQGPPPPPPP 200


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/80 (26%), Positives = 22/80 (27%)
 Frame = +2

Query: 236 PKPXFXXXXXXPKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPSX 415
           P P        P   P    +    GG      P        G  PPPPP    PP P  
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP-- 772

Query: 416 LXXXXXXXXFGGGEXXXXPP 475
                    F GG     PP
Sbjct: 773 --PPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/80 (26%), Positives = 22/80 (27%)
 Frame = +2

Query: 236 PKPXFXXXXXXPKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPSX 415
           P P        P   P    +    GG      P        G  PPPPP    PP P  
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP-- 772

Query: 416 LXXXXXXXXFGGGEXXXXPP 475
                    F GG     PP
Sbjct: 773 --PPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/80 (26%), Positives = 22/80 (27%)
 Frame = +2

Query: 236 PKPXFXXXXXXPKXGPXKKKIXXEGGGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPSX 415
           P P        P   P    +    GG      P        G  PPPPP    PP P  
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP-- 355

Query: 416 LXXXXXXXXFGGGEXXXXPP 475
                    F GG     PP
Sbjct: 356 --PPPPPGGFKGGPPPPPPP 373


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +2

Query: 356 PRGEXPPPPPXXXXPPXPSXLXXXXXXXXFGGGEXXXXPPPXXXXXKRGGVF 511
           PRG  PPPPP       P           FG G      PP      RGG +
Sbjct: 300 PRGHFPPPPPHFMGRGMPPPF--MPPPPHFGMGPPRGFMPPPHPMMFRGGPY 349


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +2

Query: 356 PRGEXPPPPPXXXXPPXPSXLXXXXXXXXFGGGEXXXXPPPXXXXXKRGGVF 511
           PRG  PPPPP       P           FG G      PP      RGG +
Sbjct: 300 PRGHFPPPPPHFMGRGMPPPF--MPPPPHFGMGPPRGFMPPPHPMMFRGGPY 349


>AC024838-7|AAF60820.1|  381|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.2 protein.
          Length = 381

 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 822 PPPPXPPP 845
           PPPP PPP
Sbjct: 186 PPPPIPPP 193



 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 825 PPPXPPPP 848
           PPP PPPP
Sbjct: 191 PPPGPPPP 198


>AC024838-3|AAF60821.1|  381|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.3 protein.
          Length = 381

 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 822 PPPPXPPP 845
           PPPP PPP
Sbjct: 186 PPPPIPPP 193



 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 825 PPPXPPPP 848
           PPP PPPP
Sbjct: 191 PPPGPPPP 198


>U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical
           protein ZK546.7 protein.
          Length = 346

 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 822 PPPPXPPP 845
           PPPP PPP
Sbjct: 151 PPPPIPPP 158



 Score = 23.4 bits (48), Expect(2) = 7.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 825 PPPXPPPP 848
           PPP PPPP
Sbjct: 156 PPPGPPPP 163


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 311 GGXGKKLSPXXKKXXPRGEXPPPPPXXXXPPXPS 412
           GG G   +P      P  + PP PP    PP P+
Sbjct: 220 GGPGNPGAPGAVTEVPGQQGPPGPPGPAGPPGPA 253


>AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical
           protein K08D12.3a protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 478 GGGGXXXFPPXKXFFFFFXXEXGGXGGXXXXGGGGG 371
           GGGG   +   +   F      GG GG    GGGGG
Sbjct: 31  GGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGG 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,892
Number of Sequences: 27780
Number of extensions: 228360
Number of successful extensions: 2541
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)