Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    26   6.3  
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    26   6.3  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    26   6.3  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   8.3  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   8.3  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 EXIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANI 434
           + I+ + NT +D + K + A  + + VGR+ ANI
Sbjct: 10  QHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANI 43


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 EXIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANI 434
           + I+ + NT +D + K + A  + + VGR+ ANI
Sbjct: 10  QHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANI 43


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 641 PLPLVAQLHGGRHRGEQLAF 582
           P+P    L+GGRH G  LAF
Sbjct: 148 PVPSFNVLNGGRHAGGDLAF 167


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -3

Query: 394 WAAMNLSCASITVFCIAIIXSTPVNFSXLVTKACTFLVKLAYLKRSATSETCXAGTXL 221
           + A++ +C+++ V     +     +F+ +V + CT L+ +  L  S+TSET   G+ +
Sbjct: 177 YVALSFACSALIVLPTKFLARFS-SFN-VVFQICTILIFIISLAASSTSETRNTGSYI 232


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +2

Query: 683 DFWHGARYSRFDDKQSP-EDGRVQGHDGAADGQKRERXVHH--RGGRDRQPGRHHGGDEN 853
           D    +R+   DD ++P E+ R+      A     +   H   R  R R+PGR      +
Sbjct: 157 DRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRSRRPGRSRSRRRS 216

Query: 854 RXPLP 868
           R P P
Sbjct: 217 RRPSP 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,614
Number of Sequences: 5004
Number of extensions: 49662
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)