Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N13
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0951 + 33014250-33014575,33015650-33015764 32 0.70
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 31 0.93
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015... 31 1.2
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 31 1.6
04_04_1416 - 33411900-33412148,33412735-33412854,33412986-334132... 31 1.6
01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496 31 1.6
05_03_0500 + 14740454-14740467,14740831-14741098 30 2.1
12_02_1224 + 27158810-27161366,27161593-27161969 30 2.8
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 29 3.8
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 29 5.0
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 29 5.0
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 28 8.7
06_02_0067 - 11087664-11087786,11087954-11088000,11088217-110883... 28 8.7
>02_05_0951 + 33014250-33014575,33015650-33015764
Length = 146
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -1
Query: 825 GWRSRPPRWCTXRSRFWPSAAPSCP*TRPSSGDCLSSNRLYRAPCQKSRQRC 670
G R P C R R S++ S RP+ GD S L A C +QRC
Sbjct: 95 GGRVDAPTLCCDRERQLSSSSSSL---RPAGGDAASEQLLAAAACASPQQRC 143
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 31.5 bits (68), Expect = 0.93
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +2
Query: 671 HRCLDFWHGARYSRFDDKQSPEDGRVQGHDGAADGQKRERXVHHRGGRDRQPGRHHG--G 844
HR D H R+ DD + + G G D R R HHR + R HG
Sbjct: 18 HRSRDDHHRRRHDADDDHRRHKRG-----GGGDDDDDRRRRRHHRDDEEESRSRRHGHHR 72
Query: 845 DENRXPLPXTISP 883
D R L + SP
Sbjct: 73 DGGRRSLSPSESP 85
>04_03_0742 +
19200045-19200053,19200158-19200437,19201331-19201545,
19201705-19201792,19202277-19202842
Length = 385
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 716 DDKQSPEDGRVQGHDGAADGQKRERXVHHRGGRDRQPGRHHGGDENRXP 862
D+K+ +DG+ +G +G D +K E+ GG G D+ + P
Sbjct: 267 DEKEEKKDGKEEGGNGGGDEKKEEKEKEKEGG--NADGEEKDKDKEKDP 313
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 683 DFWHGARYSRFDDKQSPEDGR--VQGHDGAADGQ-KRERXVHHRGGRDRQPGRHHGG-DE 850
D W G Y DD+Q G+ V A G E V G ++ QPG+HHG +
Sbjct: 61 DRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVPQPGSQNVQPGQHHGHISK 120
Query: 851 NRXPLP 868
N LP
Sbjct: 121 NLMKLP 126
>04_04_1416 -
33411900-33412148,33412735-33412854,33412986-33413235,
33413998-33414131
Length = 250
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 701 RYSRFDDKQSPEDGRVQGHDGAADGQKRERXVHHRGGRDRQPG-RHHGGD 847
R R DD +DG G DG DG HH G D G HHGGD
Sbjct: 177 RRRRRDDDGGGDDGP-DGGDGGGDGGG-----HHEHGGDHGGGWHHHGGD 220
>01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496
Length = 582
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -2
Query: 638 LPLVAQLHGGRHR----GEQLAFFLLGIGEEGP 552
+P V LHGG H G A+F G GE GP
Sbjct: 145 VPTVVHLHGGAHPPQSDGSAFAWFTAGFGETGP 177
>05_03_0500 + 14740454-14740467,14740831-14741098
Length = 93
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 692 HGARYSRFDDKQSPEDGRVQGHDGAADGQKRERXVHHRGGRDRQPGRHH--GGDENR 856
HGA +Q +D V H G +G+ R V G+D G+HH GGD R
Sbjct: 33 HGASGGSGVARQKGKDFTVGNHHGVGEGRLRCSVVE--AGKDLAVGKHHGAGGDWRR 87
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1
Query: 579 PSRHRRRGSAGHVLVL*ACALQCRAASIS 493
P+R R RG AG V V+ CAL C A+++
Sbjct: 591 PARLRMRGLAGSVWVVAVCALVCVVATLA 619
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 123 SPPPXHRAASFKAKINXAQLHVTXRAKVXQLXTKXVPAXQVSEVAERFKYANLTKKVQAL 302
+PPP H A+ KAK++ A+ + + + A SEV +FK L KK+
Sbjct: 215 APPPAHTRATKKAKVDAAK----NKDPGYDCTQEELDAYVASEVKRQFKPRCLEKKIPID 270
Query: 303 VTKXEKFTGVEXI 341
+ F GV I
Sbjct: 271 PSVRNFFRGVAPI 283
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 719 DKQSPED-GRVQGHDGAADGQKRERXVHHRGGRDRQPGRHHGGDENRXPLP 868
+++ P++ GR + H+ DG +R R R PGRH NR P P
Sbjct: 344 ERRVPDNTGRGRRHNDVDDGDRRRDNSGRRRQDSRDPGRH---PRNRTPEP 391
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 534 IQERALRTLFADAEKEERELFATMSAAVKLGHERERAHAE 653
+QERAL T ++ E R+L S VK ++ R HAE
Sbjct: 180 VQERALDTARSNLEHTARKLTQRYSDFVKCFSQQHRGHAE 219
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 719 DKQSPEDGRVQGHDGAADGQKRERXVHHRGGRDRQPGRHHGGDENR 856
++ E R + HD + +E HHR RDR R G D R
Sbjct: 310 ERDRDERTRERSHDRTRERDSKEDRHHHRD-RDRTRDRERGRDRER 354
>06_02_0067 -
11087664-11087786,11087954-11088000,11088217-11088384,
11089278-11089491,11091102-11091275
Length = 241
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 63 SCXSXASXVFFHLXIICXXGSPPPXHRAA 149
SC + A+ + F+ ++ G+PPP +AA
Sbjct: 210 SCVTSAAMICFYSYVLLAGGNPPPKKKAA 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,001,151
Number of Sequences: 37544
Number of extensions: 419948
Number of successful extensions: 1532
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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