Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N13
         (891 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.8  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   3.1  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
 Frame = +3

Query: 348 IQNTVIDAQDKFIAAQDRRRDVGRQLANIEI*N*KKLHAEMQNTMKGDXKYLQLCTEEHK 527
           I+N++ + Q++    ++++RD+  QL+  +     K+  + Q   K      +L   + +
Sbjct: 638 IENSIKELQERCAELREQKRDLQEQLSKYQQ---TKMKVKRQE-QKCKELTARLVNVDEE 693

Query: 528 LIIQERALRTLFADAEKEER------ELFATMSAAVKLGHERERAHAERN 659
            +  ER+ RT+      ++R      E +A  S    L  +R R   ERN
Sbjct: 694 KVKFERSCRTIIEQLLDQQRRKVAALERYAAASREHDLLEQRIRLFEERN 743


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 465 EMQNTMKGDXKYLQLCTEEHKLIIQERALRTLFADAEKEERE 590
           +  NT KG  K   LC E+H L + ER  R    + E+  R+
Sbjct: 333 QTNNTFKGYLK-CPLCNEQHPLHVCERFERASVINREEIVRK 373


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,859
Number of Sequences: 2352
Number of extensions: 13849
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95920632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)