Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N12
         (1365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.3  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   5.8  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   5.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 465 PPXPPGGXXPPPP 427
           PP PPGG  PPPP
Sbjct: 761 PPPPPGGCPPPPP 773



 Score = 29.5 bits (63), Expect = 5.8
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
 Frame = -1

Query: 552 PPXGGXXKKKIXPPXKXXXPFXKGXYXFFPPXPPG----GXXPPPPXXKXFXXAPXKKXX 385
           PP GG       PP     P   G     PP PPG    G  PPPP       AP     
Sbjct: 746 PPPGGLPPISGGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDY 803

Query: 384 XFPKXLKK 361
             PK + K
Sbjct: 804 LPPKKVPK 811


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 465 PPXPPGGXXPPPP 427
           PP PPGG  PPPP
Sbjct: 761 PPPPPGGCPPPPP 773



 Score = 29.5 bits (63), Expect = 5.8
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
 Frame = -1

Query: 552 PPXGGXXKKKIXPPXKXXXPFXKGXYXFFPPXPPG----GXXPPPPXXKXFXXAPXKKXX 385
           PP GG       PP     P   G     PP PPG    G  PPPP       AP     
Sbjct: 746 PPPGGLPPISGGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDY 803

Query: 384 XFPKXLKK 361
             PK + K
Sbjct: 804 LPPKKVPK 811


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 465 PPXPPGGXXPPPP 427
           PP PPGG  PPPP
Sbjct: 344 PPPPPGGCPPPPP 356



 Score = 29.5 bits (63), Expect = 5.8
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
 Frame = -1

Query: 552 PPXGGXXKKKIXPPXKXXXPFXKGXYXFFPPXPPG----GXXPPPPXXKXFXXAPXKKXX 385
           PP GG       PP     P   G     PP PPG    G  PPPP       AP     
Sbjct: 329 PPPGGLPPISGGPPPPPPPP--GGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDY 386

Query: 384 XFPKXLKK 361
             PK + K
Sbjct: 387 LPPKKVPK 394


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 516 PPXKXXXPFXK--GXYXFFPPXPPGGXXPPPP 427
           PP     P+      + FFPP P G   PPPP
Sbjct: 278 PPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPP 309


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -1

Query: 516 PPXKXXXPFXK--GXYXFFPPXPPGGXXPPPP 427
           PP     P+      + FFPP P G   PPPP
Sbjct: 278 PPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPP 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,587,793
Number of Sequences: 27780
Number of extensions: 154216
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3850470860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)