Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N10
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.38
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.50
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -2
Query: 630 PRXGGXPXPPPXXSXPGXXLGGGGXGPPPXXPXXPXGGGXF 508
P GG P PPP P G G PPP P GG +
Sbjct: 756 PIMGGPPPPPP----PPGVAGAGPPPPPPPPPAVSAGGSRY 792
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 515 PPPXGXXGXXGGGPXPPPP 571
PPP G G GP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Frame = -1
Query: 610 PXPPPXVXXGXXPGGGGXGAPXXXP-----PXPXGGGXFFGXXXPPPPPPP 473
P PPP P P P P P G PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -1
Query: 610 PXPPPXVXXGXXPGGGGXGAPXXXPPXPXGGGXFFGXXXPPPPPPP 473
P PPP G P P PP G G PPPPPPP
Sbjct: 750 PVPPPAPIMGGPP-------PPPPPPGVAGAGP-----PPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 504 PKKXPPPXGXGGXXXGAPXPPPP 572
P PPP G G P PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 633 PPRXGGXPXPPPXXSXPGXXLGGGGXGPPPXXPXXPXGGG 514
PP PPP PG + G G PPP P GG
Sbjct: 752 PPPAPIMGGPPPPPPPPG--VAGAGPPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 339 PPPPXFFFXXGXPPPPP 289
PPPP G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -1
Query: 610 PXPPPXVXXGXXPGGGGXGAPXXXPPXPX--GGGXFFGXXXPPPPPPP 473
P PPP PG G G P PP P GG + P P P
Sbjct: 761 PPPPPP-----PPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +2
Query: 503 PKKXPPPXGXXGXXGGGPXPPPPRXXPGXDXXGGGXGXPP 622
P P P GGP PPPP PG G G PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPP--PPG--VAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 360 PLFXXGGPPPPXFFFXXGXPPPPPXGGP 277
P+ PPPP PPPPP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 550 PXXXPPXPXGGGXFFGXXXPPPPPPPXXXK 461
P PP P F PPPPPPP K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 339 PPPPXFFFXXGXPPPPPXGG 280
PPPP F PPPPP G
Sbjct: 12 PPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.50
Identities = 23/92 (25%), Positives = 25/92 (27%), Gaps = 7/92 (7%)
Frame = -1
Query: 610 PXPPPXVXXGXXP-GGGGXGAPXXXPPXPXGGGXFFGXXXP------PPPPPPXXXKXNX 452
P PP G P G G + PP P P PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 451 LXXGPXXFSXXXXGXXXPPXPLXXXXXXFXPP 356
P S PP + PP
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Frame = -1
Query: 610 PXPPPXVXXGXXPGGGGXGAPXXXPPX--------PXGGGXFFGXXXPPPPPP 476
P PPP P PP P G G PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 519 PPXGXGGXXXGAPXPPPP 572
PP G G P PPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 529 PXGGGXFFGXXXPPPPPPP 473
P G G PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,777
Number of Sequences: 5004
Number of extensions: 28222
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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