Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N09
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1414 + 30012195-30012360,30012448-30012830 33 0.32
02_04_0396 - 22591963-22592150,22592571-22592649 32 0.73
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.97
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 31 1.3
07_01_0479 + 3606663-3607448 31 1.3
02_04_0400 - 22608519-22608844,22609044-22609122 30 2.9
02_02_0240 + 8196140-8198248,8198381-8198650 30 2.9
07_01_0080 + 587674-588510 29 5.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.2
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 5.2
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 29 6.8
06_03_1150 + 28022633-28023374,28023501-28023565 29 6.8
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 28 9.0
>06_03_1414 + 30012195-30012360,30012448-30012830
Length = 182
Score = 33.1 bits (72), Expect = 0.32
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 673 GGGGXGXXPPPGGGXXFPPXXGG 741
GGGG G PPP G PP GG
Sbjct: 133 GGGGGGGSPPPSGVPLHPPAAGG 155
>02_04_0396 - 22591963-22592150,22592571-22592649
Length = 88
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 673 GGGGXGXXPPPGGGXXFPPXXGGXP 747
GGGG G PPG G +PP GG P
Sbjct: 33 GGGGGGGGGPPGYGH-YPPWNGGYP 56
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 0.97
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPPP 672
PP G PPP G P PPPP
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPP 369
Score = 31.5 bits (68), Expect = 0.97
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPPP 672
PP G PPP G P PPPP
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPP 370
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPP 675
PP G PPP G P PPP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPP 359
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPPP 672
PP PPP GG PPPP
Sbjct: 358 PPKGPSPPPPPPPGGKKGGPPPP 380
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPPP 672
P GG PPP GG PPPP
Sbjct: 77 PDGGGGGEMPPPYGGAAAAPPPP 99
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 675 GGGGXXXPPPGGGXXXSPP 731
GGGG PPP GG +PP
Sbjct: 79 GGGGGEMPPPYGGAAAAPP 97
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +1
Query: 688 GXXPPPGGGXXFPPXXGGXPXXKXFXXXAPPXGXXPXXGXXXXXF-PXXPPPP 843
G PPP G P G P + PP G P G F P PPPP
Sbjct: 199 GGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRP--GMPPPPFRPGMPPPP 249
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 673 GGGGXGXXPPPGGGXXFPPXXGG 741
GGGG G GGG +PP GG
Sbjct: 78 GGGGGGGGGGGGGGGYYPPWNGG 100
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 673 GGGGXGXXPPPGGGXXFPPXXG 738
GGGG G PP G +PP G
Sbjct: 86 GGGGGGGYYPPWNGGYYPPGPG 107
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 713 PPPGGGXXPXPPP 675
PPPGGG P PPP
Sbjct: 25 PPPGGGAKPEPPP 37
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPPP 672
PP G PPP P PPPP
Sbjct: 97 PPPSSGSPPPPPPPPPPPPPPPP 119
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPPPP 672
PP G PPP P PPPP
Sbjct: 98 PPSSGSPPPPPPPPPPPPPPPPP 120
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = -3
Query: 740 PPXXGGXXXPPPGG--GXXPXPPPP 672
P GG PPP G G P PPPP
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPP 1166
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 740 PPXXGGXXXPPPGGGXXPXPP 678
PP G PPPGG P PP
Sbjct: 1210 PPGVPGGPPPPPGGRGLPAPP 1230
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Frame = -3
Query: 740 PPXXG--GXXXPPP--GGGXXPXPPPP 672
PP G G PPP G G P PPPP
Sbjct: 1089 PPTLGDYGVAPPPPSIGAGAPPPPPPP 1115
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 713 PPPGGGXXPXPPPP 672
PPP GG P PPPP
Sbjct: 297 PPPVGGTQPPPPPP 310
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +1
Query: 676 GGGXGXXPPPGGGXXFPPXXGGXPXXKXFXXXAPPXGXXPXXGXXXXXFPXXPP 837
GGG P G G FP P F A P G P G FP P
Sbjct: 88 GGGGAAPPSAGSGFRFP-----FPLPLPFPAPASPGGAPPSSGSGFPAFPFPFP 136
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +1
Query: 676 GGGXGXXPPPGGGXXFPPXXGGXPXXKXFXXXAPPXGXXPXXGXXXXXFPXXPP 837
GGG P G G FP P F A P G P G FP P
Sbjct: 88 GGGGAAPPSAGSGFRFP-----FPLPLPFPAPASPGGAPPSSGSGFPAFPFPFP 136
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +1
Query: 700 PPGGGXXFPPXXGGXPXXKXFXXXAPPXGXXPXXGXXXXXFPXXPPP 840
PPG G PP G P PP P G P P P
Sbjct: 236 PPGQGFNSPPPPGQGPVLPRDAPPMPPPPSPPNPGAPPSYQPHAPNP 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,665
Number of Sequences: 37544
Number of extensions: 225330
Number of successful extensions: 1648
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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