Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N04
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   155   1e-38
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   155   1e-38
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   155   1e-38
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    50   4e-07
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    27   4.6  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    26   8.1  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   8.1  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  155 bits (375), Expect = 1e-38
 Identities = 72/81 (88%), Positives = 80/81 (98%)
 Frame = +1

Query: 139 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHA 318
           RHRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHA
Sbjct: 18  RHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHA 77

Query: 319 KRKTVTAMDVVYALKRQGRTL 381
           KRKTVT++DVVY+LKRQGRT+
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTI 98


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  155 bits (375), Expect = 1e-38
 Identities = 72/81 (88%), Positives = 80/81 (98%)
 Frame = +1

Query: 139 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHA 318
           RHRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHA
Sbjct: 18  RHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHA 77

Query: 319 KRKTVTAMDVVYALKRQGRTL 381
           KRKTVT++DVVY+LKRQGRT+
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTI 98


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  155 bits (375), Expect = 1e-38
 Identities = 72/81 (88%), Positives = 80/81 (98%)
 Frame = +1

Query: 139 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHA 318
           RHRK+LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR+VLK+FLENVIRDAVTYTEHA
Sbjct: 18  RHRKILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHA 77

Query: 319 KRKTVTAMDVVYALKRQGRTL 381
           KRKTVT++DVVY+LKRQGRT+
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTI 98


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = +1

Query: 190 IRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 369
           IR+LA     K+I+G + EE  +  ++F + +  D   + +HA RKT+   DVV  +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 238 IYEETRSVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 372
           I +ET  VL    E+  I D+ T T+  KRK V    ++Y   R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 241 YEETRSVLKVFLENVIRDAVTYTEHAKRKT-VTAMDVVY 354
           + E R+ LK   EN+IR+   Y E A + T  T +D  +
Sbjct: 46  FAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAF 84


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 156 ENFPVPFRASLPTSLSRLYRDPSLLRQAFKRQTVMAKN 43
           E  PVP+ AS   +   LY  P+L+R A +     +K+
Sbjct: 338 EPAPVPYTASYVANSGTLYDYPTLIRLAIRNTLSPSKD 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,535
Number of Sequences: 5004
Number of extensions: 46797
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)