Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N02
         (1174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563...    23   3.1  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    25   4.7  

>02_04_0654 -
           24755339-24755408,24755488-24755624,24756243-24756326,
           24756929-24756944,24758035-24758405
          Length = 225

 Score = 23.0 bits (47), Expect(3) = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 373 PPPPPPXF 396
           PPPPPP F
Sbjct: 34  PPPPPPLF 41



 Score = 22.2 bits (45), Expect(3) = 3.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 331 KKKKKKKXGXXLXXPPPPPP 390
           +K++ +        PPPPPP
Sbjct: 19  RKERDRPSSEEQRAPPPPPP 38



 Score = 21.8 bits (44), Expect(3) = 3.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 376 PPPPPXFXK 402
           PPPPP F K
Sbjct: 64  PPPPPPFPK 72


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 25.0 bits (52), Expect(2) = 4.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 340 KKKKXGXXLXXPPPPPP 390
           KKKK       PPPPPP
Sbjct: 101 KKKKRHHHHHPPPPPPP 117



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 373 PPPPPPXF 396
           PPPPPP F
Sbjct: 129 PPPPPPPF 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,782,983
Number of Sequences: 37544
Number of extensions: 303939
Number of successful extensions: 3086
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2698
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3584899172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)