Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_N01
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    56   5e-09
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    29   1.2  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 20/36 (55%), Positives = 30/36 (83%)
 Frame = +2

Query: 617 RILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPP 724
           +I++AP PKVP ++S  AHWL+++GVQP +P+NP P
Sbjct: 110 KIINAPLPKVPRNISYSAHWLAIEGVQPAIPQNPTP 145


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +2

Query: 632 PPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPISKLSKPSNKDSAGKP 811
           PPP+  +++   A  L+++ VQPT   +   L+ +           ++ KPSN++  G+ 
Sbjct: 463 PPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQ-----------EVYKPSNENREGET 511

Query: 812 ICGKAARLKASEFVH 856
           I      + ++E  H
Sbjct: 512 ITRSGIAISSTEMDH 526


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 659  SVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDP 763
            +VRA  +  D + P V ENPPPL K  Q +    P
Sbjct: 1155 AVRAA-MKADKIFPAVHENPPPL-KTKQSIAKPSP 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,692
Number of Sequences: 5004
Number of extensions: 52997
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)