Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N01
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 59 4e-09
01_06_1682 - 39130696-39131705,39132355-39132583 31 1.3
12_01_0753 + 6810239-6810661,6812495-6812584,6812724-6812894,681... 31 1.7
12_02_1174 - 26696869-26698191 30 2.2
08_02_1464 - 27317282-27318037 30 2.2
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895... 29 5.1
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 29 5.1
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 29 5.1
06_03_0750 - 24140988-24141037,24141108-24141345,24142158-241422... 29 6.7
01_06_0113 - 26569803-26569874,26570032-26570111,26570712-26571258 29 6.7
01_01_0051 + 389051-389623 29 6.7
02_02_0659 - 12728664-12728668,12728756-12728996 28 8.9
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 59.3 bits (137), Expect = 4e-09
Identities = 40/114 (35%), Positives = 55/114 (48%)
Frame = +2
Query: 380 LADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA*FAAXXXX 559
LA V YRL+ + K M H+KR L+ D++S + +Y FA+
Sbjct: 29 LAPDVEYRLR-EIMQEAIKCMRHAKRTVLTADDVDSALSLRNVEP---VYG--FASGDPL 82
Query: 560 XXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPP 721
D I+ AP PK PLD +V AHWL+++GVQP +PENPP
Sbjct: 83 RFKRAVGHKDLFYIDDR--EIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPP 134
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 635 PPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPISKLSKP 784
PPKVPL++S AH S QP V +PPP + A + ++ P
Sbjct: 359 PPKVPLEMSPPAHATS---PQPLVHYSPPPPLQHAGISSTTPSVNSYQSP 405
>12_01_0753 +
6810239-6810661,6812495-6812584,6812724-6812894,
6813015-6813109,6813538-6813658,6813884-6814015
Length = 343
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 620 ILSAPPPKVPLD--VSVRAHWLSVDGVQPTVPENPPP 724
+LSAPPP P+D S AH P PE PP
Sbjct: 6 LLSAPPPPPPMDEDASAGAHHAFPGPAPPPSPEGAPP 42
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +2
Query: 629 APPPKVPLDVSVRAHW--LSVDGVQPTVPENPPPLSKEAQKLESV---DPISKLSKPSNK 793
+PPP PL +W +V +PT P+ PPP + S P ++ K
Sbjct: 266 SPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPPQQPSQRYWTPPPAITPEPAK 325
Query: 794 DSAGKPICGKAARLKAS 844
+AGKP K S
Sbjct: 326 PAAGKPTSSSPPSTKDS 342
>08_02_1464 - 27317282-27318037
Length = 251
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 710 ENPPPLSKEAQKLESVDPISKLSKPSNKDSAGK 808
E PPP + A S +P +LS PS+K AG+
Sbjct: 12 EWPPPALQAASTTSSSEPCRRLSPPSSKRPAGR 44
>06_03_0152 +
17287133-17287490,17288541-17288734,17289349-17289557,
17289640-17289742,17290128-17290291,17290554-17290692,
17290908-17291078,17291162-17291298,17291445-17291759,
17291906-17291965,17292372-17292511,17292691-17292788,
17292875-17293387
Length = 866
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Frame = +2
Query: 659 SVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPIS---KLSKPSNK 793
S+ ++ LS+ + PT +NP P+S A LE+ +S KLSKP+NK
Sbjct: 731 SMASNILSMANLNPT--QNPVPISN-ASPLEAYRDLSMERKLSKPANK 775
>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 698 PTVPENPPPLSKEAQKLESVDPISK-LSKPSNKDSAGKPICGKAARLKASE 847
PT P+ P PL K+ S+DP+SK +S SN ++ + KAA L S+
Sbjct: 873 PT-PKQPAPL---VDKVTSLDPVSKQMSSMSNSEAREAILPKKAAVLSVSQ 919
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 722 PLSKEAQKLE--SVDPISKLSKPSNKDSAGKPICGKAARLKASEFVHVN 862
P+SK + E S +SK + P++ S+GK K ++ VHVN
Sbjct: 336 PVSKTVDRAEQTSNSTVSKPTSPASDGSSGKHYPAKRLKVDVPHLVHVN 384
>06_03_0750 -
24140988-24141037,24141108-24141345,24142158-24142232,
24142345-24142413,24142550-24142581,24143503-24143583,
24143791-24143851,24144135-24144275,24144372-24144563
Length = 312
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Frame = +2
Query: 632 PPPKVPLD---VSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPIS--KLSKPSNKD 796
PPP P D V A + + P P PPP + DP S K + K
Sbjct: 15 PPPAFPADPHLVDRAARFSAFASPSPPSPPPPPPPPPSSSSKRKPDPASKGKAAAKKGKT 74
Query: 797 SAGKPICGKAARLKASEFVHVNS 865
+A G + +VHV +
Sbjct: 75 AASGEDGGDGGEDEKPAYVHVRA 97
>01_06_0113 - 26569803-26569874,26570032-26570111,26570712-26571258
Length = 232
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 611 LGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDP 763
L +L AP P D ++ + V+G+ P +P PP+ A + V P
Sbjct: 28 LAVVLMAPIINGPPDPNISIRLVGVEGLDPRLPAPVPPVFDLAVDVAGVSP 78
>01_01_0051 + 389051-389623
Length = 190
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 707 PENPPPLSKEAQKLESVDPISKLSKPSNKDSAGKPICGKAAR 832
P PP KEA++ S P S S S+ S+G ++AR
Sbjct: 146 PSPPPQYKKEARRSPSPSPPSSSSTSSSSSSSGSSWWTRSAR 187
>02_02_0659 - 12728664-12728668,12728756-12728996
Length = 81
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 681 LSQCARTDTSNGTFGGGADRILPRDLSLF 595
L + A + G F GGA+ +LP DL+L+
Sbjct: 42 LQEGANHELPGGDFQGGANHVLPFDLNLY 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,197,739
Number of Sequences: 37544
Number of extensions: 356504
Number of successful extensions: 967
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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