Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_N01
(905 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U06459-1|AAC46480.1| 592|Drosophila melanogaster transcription ... 123 3e-28
L25443-1|AAA16536.1| 592|Drosophila melanogaster TAFII60 protein. 123 3e-28
AY051702-1|AAK93126.1| 606|Drosophila melanogaster LD24529p pro... 123 3e-28
AE014296-3177|AAF49139.2| 606|Drosophila melanogaster CG32211-P... 123 3e-28
AY058569-1|AAL13798.1| 1472|Drosophila melanogaster LD25641p pro... 31 2.9
AE014298-2781|AAF48895.2| 1868|Drosophila melanogaster CG7282-PA... 31 2.9
>U06459-1|AAC46480.1| 592|Drosophila melanogaster transcription
initiation factorTFIID 62 kDa subunit protein.
Length = 592
Score = 123 bits (297), Expect = 3e-28
Identities = 69/168 (41%), Positives = 96/168 (57%)
Frame = +2
Query: 356 LGXXAAKXLADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA 535
L AAK LA+ V+ +LK KFM+H+KRQKLS+ DI+ + + +
Sbjct: 24 LSDDAAKELAEDVSIKLKRIVQDAA-KFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAK 82
Query: 536 *FAAXXXXXXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPEN 715
F + LG I S K+PLD+++R+HW V+GVQPTVPEN
Sbjct: 83 DFIPFRFASGGGRELHFTEDK-EIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPEN 141
Query: 716 PPPLSKEAQKLESVDPISKLSKPSNKDSAGKPICGKAARLKASEFVHV 859
PPPLSK++Q L+SV+P+ K+ + NKD+AGKP GK +LK E +HV
Sbjct: 142 PPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHV 189
Score = 68.1 bits (159), Expect = 2e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = +3
Query: 489 ALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDL 611
+LK++N E QYGF+ D +PFRFASGGGRELHF E+KEIDL
Sbjct: 67 SLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDL 107
>L25443-1|AAA16536.1| 592|Drosophila melanogaster TAFII60 protein.
Length = 592
Score = 123 bits (297), Expect = 3e-28
Identities = 69/168 (41%), Positives = 96/168 (57%)
Frame = +2
Query: 356 LGXXAAKXLADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA 535
L AAK LA+ V+ +LK KFM+H+KRQKLS+ DI+ + + +
Sbjct: 24 LSDDAAKELAEDVSIKLKRIVQDAA-KFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAK 82
Query: 536 *FAAXXXXXXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPEN 715
F + LG I S K+PLD+++R+HW V+GVQPTVPEN
Sbjct: 83 DFIPLRFASGGGRELHFTEDK-EIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPEN 141
Query: 716 PPPLSKEAQKLESVDPISKLSKPSNKDSAGKPICGKAARLKASEFVHV 859
PPPLSK++Q L+SV+P+ K+ + NKD+AGKP GK +LK E +HV
Sbjct: 142 PPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHV 189
Score = 65.7 bits (153), Expect = 8e-11
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = +3
Query: 489 ALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDL 611
+LK++N E QYGF+ D +P RFASGGGRELHF E+KEIDL
Sbjct: 67 SLKVRNVEPQYGFVAKDFIPLRFASGGGRELHFTEDKEIDL 107
>AY051702-1|AAK93126.1| 606|Drosophila melanogaster LD24529p
protein.
Length = 606
Score = 123 bits (297), Expect = 3e-28
Identities = 69/168 (41%), Positives = 96/168 (57%)
Frame = +2
Query: 356 LGXXAAKXLADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA 535
L AAK LA+ V+ +LK KFM+H+KRQKLS+ DI+ + + +
Sbjct: 38 LSDDAAKELAEDVSIKLKRIVQDAA-KFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAK 96
Query: 536 *FAAXXXXXXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPEN 715
F + LG I S K+PLD+++R+HW V+GVQPTVPEN
Sbjct: 97 DFIPFRFASGGGRELHFTEDK-EIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPEN 155
Query: 716 PPPLSKEAQKLESVDPISKLSKPSNKDSAGKPICGKAARLKASEFVHV 859
PPPLSK++Q L+SV+P+ K+ + NKD+AGKP GK +LK E +HV
Sbjct: 156 PPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHV 203
Score = 68.1 bits (159), Expect = 2e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = +3
Query: 489 ALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDL 611
+LK++N E QYGF+ D +PFRFASGGGRELHF E+KEIDL
Sbjct: 81 SLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDL 121
>AE014296-3177|AAF49139.2| 606|Drosophila melanogaster CG32211-PA
protein.
Length = 606
Score = 123 bits (297), Expect = 3e-28
Identities = 69/168 (41%), Positives = 96/168 (57%)
Frame = +2
Query: 356 LGXXAAKXLADXVTYRLKSDCSXMP*KFMHHSKRQKLSITDIESCPEDKKQ*VSIWIYSA 535
L AAK LA+ V+ +LK KFM+H+KRQKLS+ DI+ + + +
Sbjct: 38 LSDDAAKELAEDVSIKLKRIVQDAA-KFMNHAKRQKLSVRDIDMSLKVRNVEPQYGFVAK 96
Query: 536 *FAAXXXXXXXXXXXXXXXXXXDRSLGRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPEN 715
F + LG I S K+PLD+++R+HW V+GVQPTVPEN
Sbjct: 97 DFIPFRFASGGGRELHFTEDK-EIDLGEITSTNSVKIPLDLTLRSHWFVVEGVQPTVPEN 155
Query: 716 PPPLSKEAQKLESVDPISKLSKPSNKDSAGKPICGKAARLKASEFVHV 859
PPPLSK++Q L+SV+P+ K+ + NKD+AGKP GK +LK E +HV
Sbjct: 156 PPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNVETIHV 203
Score = 68.1 bits (159), Expect = 2e-11
Identities = 29/41 (70%), Positives = 35/41 (85%)
Frame = +3
Query: 489 ALKIKNNECQYGFIQPDSLPFRFASGGGRELHFIEEKEIDL 611
+LK++N E QYGF+ D +PFRFASGGGRELHF E+KEIDL
Sbjct: 81 SLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDL 121
>AY058569-1|AAL13798.1| 1472|Drosophila melanogaster LD25641p protein.
Length = 1472
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 614 GRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPISKLSKPSNK 793
G S P P VP V + ++ G+Q +P P S A KL V L+K +
Sbjct: 932 GTSSSTPTPPVPAPVKLELGAKAMPGIQAPIPLKPAEGSSFAGKLTGVVQPPPLAKLQQQ 991
Query: 794 DSAGK 808
+ G+
Sbjct: 992 EELGQ 996
>AE014298-2781|AAF48895.2| 1868|Drosophila melanogaster CG7282-PA
protein.
Length = 1868
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 614 GRILSAPPPKVPLDVSVRAHWLSVDGVQPTVPENPPPLSKEAQKLESVDPISKLSKPSNK 793
G S P P VP V + ++ G+Q +P P S A KL V L+K +
Sbjct: 1328 GTSSSTPTPPVPAPVKLELGAKAMPGIQAPIPLKPAEGSSFAGKLTGVVQPPPLAKLQQQ 1387
Query: 794 DSAGK 808
+ G+
Sbjct: 1388 EELGQ 1392
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,569,394
Number of Sequences: 53049
Number of extensions: 605282
Number of successful extensions: 2046
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2046
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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