Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M23
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.18
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 0.77
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 9.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.18
Identities = 27/87 (31%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Frame = +2
Query: 437 GGGGGXFXG*XNXPPXGXXG-XXFGXPXXXPXXXXXXPGXXGGGXXXPPPXGGXXVSPK- 610
GGG G F G PP G G FG G GG GG P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 611 -IGGXPGKXXXXXGXPKGPXPXXGPXW 688
GG G G GP GP W
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGGPGW 273
Score = 30.3 bits (65), Expect = 0.41
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = -2
Query: 913 GXXXXPPPPXGKXGXXGFPGXXXGXGTKGGXXG--GXXRGXPPGXX*FPXG 767
G PP P G G GF G G GG G G G P G P G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect(2) = 0.77
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = -2
Query: 496 PPXPXGGXVXLTXKXPPPPPP 434
P P V PPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPP 1100
Score = 23.8 bits (49), Expect(2) = 0.77
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 451 PPPPPPXREXKXK 413
PPPPPP E + K
Sbjct: 1096 PPPPPPPAEVEKK 1108
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/75 (26%), Positives = 22/75 (29%)
Frame = -2
Query: 457 KXPPPPPPXREXKXKPXGGGKXXXPXXKGXQXXQXXPNXPKKXXFSPPFXXGGAQXPXXX 278
+ PPPPPP R + KP P G P P PP P
Sbjct: 310 RPPPPPPPSRRNRGKP--------PIGNGSSNSSLPPPPP------PPRSNAAGSIPLPP 355
Query: 277 XXXGXPXXPPQXGXP 233
P PP P
Sbjct: 356 QGRSAPPPPPPRSAP 370
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +3
Query: 768 PXGNYXXPGGXPLXXPPXXPPFVPXPXXXPGXPXXPXXPXGG-GGXXXXPXAP 923
P GN P+ PP PP P P P P P P G P AP
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAP-PSLPPSAP--PSLPMGAPAAPPLPPSAP 454
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 605 GKPXXPPXGGXXPPPPPKXRGP 540
G PP G PPPPP P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAP 370
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 618 PPILGETXXPPXGGGXXXPPPXXP 547
PP +GET PP G PP P
Sbjct: 928 PPKVGETYHPPTASGTRVPPVQQP 951
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 507 PKXNPXXPXGGXXX*PXKXPPPPPRXGXXK 418
P NP P P PPPPP G K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 508 PKXXPPXPXGGXVXLTXKXPPPPPPXREXKXK 413
P PP P + PPPPPP K K
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 496 PPXPXGGXVXLTXKXPPPPPP 434
PP P G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 599 PXXPPXGGXXPPPPPKXRGPXXXXGGXGXGPQXXTPXP 486
P P GG PPPPP G G GP P P
Sbjct: 753 PPAPIMGGPPPPPPP--------PGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 813 PPXXPPFVPXPXXXPGXPXXPXXPXGGGGXXXXPXAP 923
P P VP P G P P P G G P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(2) = 9.8
Identities = 9/25 (36%), Positives = 9/25 (36%)
Frame = -2
Query: 508 PKXXPPXPXGGXVXLTXKXPPPPPP 434
P PP L PPPPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPP 193
Score = 21.4 bits (43), Expect(2) = 9.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 451 PPPPPPXRE 425
PPPPPP E
Sbjct: 192 PPPPPPAVE 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,896
Number of Sequences: 5004
Number of extensions: 38122
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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