Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M22
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   144   1e-35
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   142   4e-35
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   2.0  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    27   2.6  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   3.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   3.4  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  144 bits (350), Expect = 1e-35
 Identities = 67/109 (61%), Positives = 80/109 (73%)
 Frame = +1

Query: 154 TLPKWLQQRNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 333
           T P     +  K+    +   L   MKSGKY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 7   TAPVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66

Query: 334 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 480
           KSE+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 67  KSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  142 bits (345), Expect = 4e-35
 Identities = 65/101 (64%), Positives = 77/101 (76%)
 Frame = +1

Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
           +  K+    +   L   MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+EYYA
Sbjct: 7   KKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYA 66

Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 480
           +L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 67  MLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 289 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 423
           ++ +VI++K   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 275 VFKVCLYPKQYFPDFIXQGKAGVN 204
           +   C+YPK+Y  D + Q +A +N
Sbjct: 154 LLSACVYPKEYEHDLLLQSQARIN 177


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 MKSGKYCLGYKQTLKTLRQGKAKLVI 306
           + SGKYC G   T+  L++G  + ++
Sbjct: 293 LDSGKYCFGVVDTMNALQEGAVETLL 318


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 177 KKQKKTIESINSRLALXDEIGKILLRIQANFENSSTRQSKAG 302
           KK++   ES+N  LA+  E+    + I+A F +    +++AG
Sbjct: 605 KKEENVSESLNEWLAIASELIDEFVSIKAFFPSEKKARARAG 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,267
Number of Sequences: 5004
Number of extensions: 46430
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)