Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M22
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...   154   1e-37
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...   149   4e-36
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...   148   5e-36
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    31   1.6  
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    30   2.7  
03_05_0830 + 28034179-28035492                                         29   4.8  

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score =  154 bits (373), Expect = 1e-37
 Identities = 68/109 (62%), Positives = 80/109 (73%)
 Frame = +1

Query: 166 WLQQRNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 345
           W+    +K+ +  +   L   MKSGKY LGYK  LKTLR  K KL+I+A N PPLRKSEI
Sbjct: 42  WVVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEI 101

Query: 346 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 492
           EYYA+L K  VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 102 EYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score =  149 bits (360), Expect = 4e-36
 Identities = 66/104 (63%), Positives = 79/104 (75%)
 Frame = +1

Query: 187 KRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 366
           K+ +  +   L   MKSGKY LGYK  LKTLR  K KLVI+A N PPLRKSEIEYYA+L 
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185

Query: 367 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 498
           K  V+H++GNN++LGTACGKYYRVC L++ DPGDSDI   LPE+
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score =  148 bits (359), Expect = 5e-36
 Identities = 67/103 (65%), Positives = 79/103 (76%)
 Frame = +1

Query: 178 RNRKRPSSQLTPALPWXMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 357
           +  K+ +  +   L   MKSGKY LGYK  L+TLR  KAKLVII+ N PPLRKSEIEYYA
Sbjct: 5   KKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYA 64

Query: 358 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 486
           +LAK  VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 65  MLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 165 MVAAKKQKKTIESINSRLALXDEIGKILL 251
           MVAAKK KK+ ++IN++L L  + GK  L
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTL 29


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 127 VLF*DSLAFTLPKWLQQRNRKRPSSQLTPALPWXMKSGK 243
           VL   +++  LP  LQ  N  RPS  LT ALPW  + G+
Sbjct: 10  VLHLPAISLPLP-CLQGSNPSRPSLGLTNALPWRRRGGR 47


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +1

Query: 253 GYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG--VHHYSGNNIELGTA-CG 423
           G K+ +K++R+G+  L IIA N  P+    I +  +L +     + Y  +  +L TA   
Sbjct: 48  GVKEVVKSIRRGQKGLCIIAGNISPI--DVITHVPILCEEANIPYVYVPSKEDLATAGTT 105

Query: 424 KYYRVCTLAITDPGDSDI 477
           K    C L +T P   ++
Sbjct: 106 KRPTCCVLVLTKPAKGEL 123


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 235 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 318
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,498
Number of Sequences: 37544
Number of extensions: 290226
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)