Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M19
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    27   3.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   5.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   6.8  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 503 STFFDIDKIFHSIELLVTLFAVTGEDVLGKYVL*DLQSKF 384
           S F  +D ++  I +L+T  AVT    +  + L +L +KF
Sbjct: 338 SLFTQVDLVYKPIFILITTVAVTASRYMNVFPLSNLLNKF 377


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
 Frame = +2

Query: 125  VFTNFNLIN*GL*SLKCCYE-CLCGVREV*F*NEAIELKMKPDPKACCVI------CQLV 283
            V   FN+++ G    +C +E CL  +  +   N    + +   PK+C V+      C +V
Sbjct: 986  VLKAFNMLSKGYAEYRCQWEGCLANLHSLE--NFIKHVLLLHHPKSCSVVKCLWASCDMV 1043

Query: 284  FCCGDCRQRHEKFVHGLTYDCPICRGSNYLCNPQTLTEDLIKHIFLEHLP 433
                +        ++ +  +C +        N     ED+ KH+   HLP
Sbjct: 1044 LPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSN----YEDMFKHLQHSHLP 1089


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 287  CCGDCRQRHEKFVHGLTYDCPICRGSNYLCNPQTLTEDLIKHIFLEH 427
            CCGDC   H ++        P+C    + C      +D+ K  F+++
Sbjct: 897  CCGDCLSEHIQYQKRRNIIPPLC----HTCRQPFNEQDVYKPFFVKN 939


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,158
Number of Sequences: 5004
Number of extensions: 43763
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)