Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M19
         (954 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745...    31   1.8  
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631...    29   5.5  

>04_03_0808 -
           19872656-19873165,19873251-19873583,19874443-19874543,
           19874628-19874853,19874941-19875079,19875339-19875451,
           19875628-19875911,19876287-19876326
          Length = 581

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/61 (22%), Positives = 34/61 (55%)
 Frame = -2

Query: 392 SKFVGCRDSWSLCRSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPSGLVSFLIQSPHFK 213
           +++ G   +W     G+R++ R R   ++GG+  ++++ +++ S PS   +   + P FK
Sbjct: 49  ARYQGDAAAWPRRLGGARRARRLRELGLAGGASWAKRRHEKASSSPSLPTNCRARFPLFK 108

Query: 212 I 210
           +
Sbjct: 109 M 109


>01_05_0222 +
           19462487-19462663,19462916-19462991,19463106-19463185,
           19463293-19463342,19463436-19463520,19463640-19463738,
           19464110-19464346
          Length = 267

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 290 SRKQVDRSHSKPSGLVSFLIQSPHFKIKLHEHHI 189
           S  Q+  S+  P  LVS L   PHFK + H+  +
Sbjct: 138 SFNQIASSYPGPLSLVSILCPDPHFKKRHHKRRV 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,678,944
Number of Sequences: 37544
Number of extensions: 295417
Number of successful extensions: 741
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)