Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M19
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 39 0.005
U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal m... 35 0.075
U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal m... 35 0.075
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 33 0.30
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 33 0.30
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 33 0.30
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 33 0.30
AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical ... 32 0.53
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical pr... 29 6.5
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 39.1 bits (87), Expect = 0.005
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 227 IELKMKPDPKAC--CVICQLVFCCGDCRQRHEKFVHGLTYDCPICRGSNYLCNPQTLTED 400
+ELK +PD K C IC VFC RH H +Y C +CR + +E
Sbjct: 40 VELK-RPDLKGSFRCSICSKVFCHSSSLSRHRMQAHFKSYKCTVCR------KDISSSES 92
Query: 401 LIKHIFLEH 427
L H+F +H
Sbjct: 93 LRTHMFKQH 101
>U41542-13|ABO16442.1| 390|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform a protein.
Length = 390
Score = 35.1 bits (77), Expect = 0.075
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 230 ELKMKPDPKAC--CVICQLVFCCGDCRQRHEKFVHGLTYDCPIC 355
ELK +PD K C ICQ VFC RH H +Y C C
Sbjct: 6 ELK-RPDLKGSFPCSICQKVFCHSSSLSRHRMQAHFKSYTCTTC 48
>U41542-12|ABO16443.1| 392|Caenorhabditis elegans Hsn abnormal
migration protein2, isoform b protein.
Length = 392
Score = 35.1 bits (77), Expect = 0.075
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 230 ELKMKPDPKAC--CVICQLVFCCGDCRQRHEKFVHGLTYDCPIC 355
ELK +PD K C ICQ VFC RH H +Y C C
Sbjct: 6 ELK-RPDLKGSFPCSICQKVFCHSSSLSRHRMQAHFKSYTCTTC 48
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = -2
Query: 353 RSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPSGLVSFLIQSPHF 216
RS SR SR RT R R SR++ DRSHS+ S S H+
Sbjct: 44 RSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW 89
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = -2
Query: 353 RSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPSGLVSFLIQSPHF 216
RS SR SR RT R R SR++ DRSHS+ S S H+
Sbjct: 72 RSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW 117
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = -2
Query: 353 RSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPSGLVSFLIQSPHF 216
RS SR SR RT R R SR++ DRSHS+ S S H+
Sbjct: 130 RSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW 175
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 33.1 bits (72), Expect = 0.30
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = -2
Query: 353 RSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPSGLVSFLIQSPHF 216
RS SR SR RT R R SR++ DRSHS+ S S H+
Sbjct: 131 RSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW 176
>AF067940-3|AAC19207.1| 272|Caenorhabditis elegans Hypothetical
protein F36F12.8 protein.
Length = 272
Score = 32.3 bits (70), Expect = 0.53
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 221 EAIELKMKPDPKA--CCVICQLVFCCGDCRQRHEKFVHGLTYDCPICRGSNYL 373
E ELK +PD + C+ C F G RH K VH Y C +C YL
Sbjct: 27 EESELK-RPDLRGDFLCLSCGQNFKHGASLNRHRKLVHSDEYTCMLCARKLYL 78
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -2
Query: 362 SLCRSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPSG 249
S +S SR SR+ R S S K+VDRS S P G
Sbjct: 249 SKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPPRG 286
>Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical
protein F15G9.5 protein.
Length = 272
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 432 GRCSRKICFMRSSVKVCGLQR*LEPLQIGQS*VKPCTNFS 313
GRCS +C +S VC R +E L + + PC ++
Sbjct: 137 GRCSNSVCHTKSPGSVC--DRKMEKLCVDNTCENPCARYA 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,703,128
Number of Sequences: 27780
Number of extensions: 268532
Number of successful extensions: 641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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