Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_M18
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 103 2e-22
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 101 7e-22
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 101 7e-22
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 101 7e-22
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 95 5e-20
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 89 3e-18
Z83744-4|CAB06040.4| 735|Caenorhabditis elegans Hypothetical pr... 33 0.37
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 28 8.0
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 103 bits (246), Expect = 2e-22
Identities = 46/89 (51%), Positives = 59/89 (66%)
Frame = +1
Query: 274 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 453
L + + + LP K ATY+WIDG+GEHLR K RT+N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71
Query: 454 NQADGHNSDTYLVPRAIYKDPFRRGNHIL 540
QADG NSD YL P A++ DPF G ++L
Sbjct: 72 GQADGLNSDRYLRPVAVFPDPFLGGLNVL 100
Score = 61.3 bits (142), Expect = 9e-10
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +2
Query: 545 MCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSD 682
MCDT + M+PT +N+R C E K D +PWFG+EQEY+++D D
Sbjct: 102 MCDTLDHEMKPTATNHRQMCAELMKKVSDQQPWFGMEQEYLIVDRD 147
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 101 bits (242), Expect = 7e-22
Identities = 44/89 (49%), Positives = 59/89 (66%)
Frame = +1
Query: 274 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 453
L + + + LP K ATY+WIDG+GE LR K RT N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71
Query: 454 NQADGHNSDTYLVPRAIYKDPFRRGNHIL 540
QA+G NSD YL P A++ DPF +G+++L
Sbjct: 72 GQAEGLNSDRYLRPVAVFPDPFLQGHNVL 100
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 545 MCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSD 682
MC+T M+PT +N+R +C K + PWFG+EQEY+++D D
Sbjct: 102 MCETLDETMKPTATNHRQNCAAIMKKVAEHHPWFGMEQEYLIVDRD 147
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 101 bits (242), Expect = 7e-22
Identities = 45/69 (65%), Positives = 53/69 (76%)
Frame = +1
Query: 334 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 513
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 514 PFRRGNHIL 540
PFR+G + L
Sbjct: 90 PFRQGKNKL 98
Score = 59.7 bits (138), Expect = 3e-09
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +2
Query: 545 MCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSD 682
MC+TY +PT +N R C+E +K D PWFG+EQEY LLD D
Sbjct: 100 MCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDID 145
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 101 bits (242), Expect = 7e-22
Identities = 45/69 (65%), Positives = 53/69 (76%)
Frame = +1
Query: 334 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 513
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 514 PFRRGNHIL 540
PFR+G + L
Sbjct: 93 PFRQGKNKL 101
Score = 59.7 bits (138), Expect = 3e-09
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = +2
Query: 545 MCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSD 682
MC+TY +PT +N R C+E +K D PWFG+EQEY LLD D
Sbjct: 103 MCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDID 148
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 95.5 bits (227), Expect = 5e-20
Identities = 45/89 (50%), Positives = 58/89 (65%)
Frame = +1
Query: 274 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 453
L ++ ++ L KI ATY+WIDG+GE+LR K RT + +PK +D PIWN+DGSST
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71
Query: 454 NQADGHNSDTYLVPRAIYKDPFRRGNHIL 540
QA G +SD YL P A Y DPF G + L
Sbjct: 72 GQAKGRDSDRYLRPVAAYPDPFLGGGNKL 100
Score = 58.4 bits (135), Expect = 7e-09
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2
Query: 545 MCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSD 682
MCDT + M+PT +++R +C E + +D PWFG+EQEY+++D D
Sbjct: 102 MCDTLDHQMQPTATSHRQACAEIMHEIRDTRPWFGMEQEYLIVDRD 147
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 89.4 bits (212), Expect = 3e-18
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +1
Query: 340 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 519
YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 520 RRG 528
R G
Sbjct: 95 RPG 97
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +2
Query: 545 MCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSD 682
+C+T ++ +P +N R C + +K KD EPWFG+EQE+ LL +D
Sbjct: 103 LCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGAD 148
>Z83744-4|CAB06040.4| 735|Caenorhabditis elegans Hypothetical
protein C06A12.4 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 512 IHSVEEITSSXMCDTYKYNMEPTESNNRISCQEAYDKCKD 631
IHSVE S M + +N+ P SNN DKCK+
Sbjct: 405 IHSVERPGSGLMMEILDHNLMPFISNNETQEDTLLDKCKE 444
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 628 LAFVVSFLTTDAIVALCWLH 569
LA V+SFLT AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 628 LAFVVSFLTTDAIVALCWLH 569
LA V+SFLT AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,176,375
Number of Sequences: 27780
Number of extensions: 441985
Number of successful extensions: 1175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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