Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M17
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    29   4.5  

>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 67  IMALTQQILLVIIGVAFVYSAPLTSGLIPNILTSPLHVLTSKPLDILDNPLRIF 228
           IMA     +L  +GV FVY A L   ++  +  S + +  S+   + +N  RI+
Sbjct: 92  IMAFASVGVLNWLGVPFVYQAVLGGAMLAGVAGSYVFLFESRSSSLPENRFRIY 145


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 67  IMALTQQILLVIIGVAFVYSAPLTSGLIPNILTSPLHVLTSKPLDILDNPLRIF 228
           IMA     +L  +GV FVY A L   ++  +  S + +  S+   + +N  RI+
Sbjct: 92  IMAFASVGVLNWLGVPFVYQAVLGGSMLAGVAGSYVFLFESRSSSLPENRFRIY 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,056,944
Number of Sequences: 27780
Number of extensions: 155495
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)