Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M16
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...   294   7e-80
11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364           30   2.1  
11_02_0131 + 8651175-8651313,8651567-8651743,8651761-8651879,865...    30   2.8  
03_02_0780 - 11131064-11131276,11131444-11131516,11134152-11134513     30   2.8  
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    29   4.8  

>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score =  294 bits (721), Expect = 7e-80
 Identities = 133/231 (57%), Positives = 178/231 (77%)
 Frame = +3

Query: 171 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 350
           M E RL++ S+LKKVLEAI++L+T A FDC   G  LQAMD+SHV+LV+L LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60

Query: 351 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 530
           RCDRN+SMGMNL +M+K+L+CAG+ D +TIKA D +D VTF+FESPNQ+K++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD 120

Query: 531 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANV 710
           +D EHLGIP++EY   +RMPSSEF+RIC+DLS  G++++IS TKEGVKFS  GDIG+AN+
Sbjct: 121 IDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANI 180

Query: 711 KLAQTASIDKXXXXXXXXXXXXXTLTFACQYLNYFTKATSLXPQVQLSXVS 863
              Q  ++DK             +LTFA +Y+N FTKA+ L  QV +S  S
Sbjct: 181 VCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSS 231


>11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364
          Length = 349

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 585 MPSSEFARICRDLSQFGESMVISCTKEGVK 674
           +PS++F  I + L QF +S+V  C + G+K
Sbjct: 61  LPSNDFNHIFKSLGQFEQSIVQDCARIGLK 90


>11_02_0131 +
           8651175-8651313,8651567-8651743,8651761-8651879,
           8652179-8652589
          Length = 281

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 585 MPSSEFARICRDLSQFGESMVISCTKEGVK 674
           +PS++F +I R L QF +S +  CT  G++
Sbjct: 10  LPSNDFNQIFRSLEQFKQSTMQHCTHRGLQ 39


>03_02_0780 - 11131064-11131276,11131444-11131516,11134152-11134513
          Length = 215

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 758 DDCLLLFVNRSGLGQLDVR*ADVACCRELYSFFCA 654
           D C + + N + +GQ+D R  D +C R+L    CA
Sbjct: 123 DYCFMRYKNANFIGQVDTR-VDASCTRDLAPLACA 156


>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 390 SMSKILKCAGDK-DTVTIKAQDNADNVTFVFESPNQEKV 503
           S+ K+    G K + +++K Q  ADN+ F FE P ++ V
Sbjct: 238 SLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEPLKDYV 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,139,119
Number of Sequences: 37544
Number of extensions: 399283
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)