Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M16
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   181   5e-46
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    36   0.050
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical...    29   3.3  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  181 bits (441), Expect = 5e-46
 Identities = 84/195 (43%), Positives = 127/195 (65%), Gaps = 1/195 (0%)
 Frame = +3

Query: 273 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQD 452
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 453 N-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQ 629
           N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+    MP+ EF + C+DLS 
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEMPAGEFQKTCKDLST 120

Query: 630 FGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTFACQYLN 809
           F +S+ I+ TK G+ F+  GDIGS+ V  + +++ D               + F+ +Y+N
Sbjct: 121 FSDSLNITATKAGIVFTGKGDIGSSVVTYSPSSNTDDETEAVTLEVKDPVNVNFSIKYMN 180

Query: 810 YFTKATSLXPQVQLS 854
            FTKAT+L  +V+LS
Sbjct: 181 QFTKATALSDRVRLS 195


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
 Frame = +3

Query: 306 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 485
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D   N+T+V   
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 486 PNQE----KVSDYEMKLMN-LDLEHLGIPETEYSCT 578
             +     KV D  M L +  D+E  G  E   +C+
Sbjct: 63  GTERKIRGKVGDNVMFLAHRYDIEMEGACEASLACS 98


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 515 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 423
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>AL032639-10|CAA21634.1|  108|Caenorhabditis elegans Hypothetical
           protein Y38F1A.9 protein.
          Length = 108

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/88 (25%), Positives = 33/88 (37%)
 Frame = +3

Query: 315 SLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ 494
           SL +  DG   + C  N +    +    K  +  GD+    IK       VT   ++P Q
Sbjct: 12  SLIIAPDGSVLFECICNANPQPTVKWFLKDKELTGDRYVSKIKKMVGKFTVTLHIKNPTQ 71

Query: 495 EKVSDYEMKLMNLDLEHLGIPETEYSCT 578
           E    Y++   N    H    +  Y CT
Sbjct: 72  EDQGVYKVTATNTHGSHSVEQQYIYKCT 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,895
Number of Sequences: 27780
Number of extensions: 360447
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)