Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M15
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852     29   3.7  
01_01_0870 - 6789903-6792251                                           28   8.5  

>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
          Length = 259

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/87 (22%), Positives = 36/87 (41%)
 Frame = -2

Query: 828 WXRARQHANITXEELNQSDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGRDDAVI 649
           W  A Q  +      +  D D +  EH +   H N Q + + + +   +V  AG   A  
Sbjct: 139 WPDAAQDLDFPQMYYSLVDADEDDDEHRSVKQHGNRQKASSPIDIPARKVSSAGAKGA-- 196

Query: 648 DLLGGAARARYGQTVIGPVGRTVYTAA 568
                A  +++GQT+ G  G + +  +
Sbjct: 197 --RAPAGFSKFGQTLAGAGGGSFFVGS 221


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = -2

Query: 687 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAAL*VCLYDINGLLDVLVYRIL 508
           G + G+    AV +L G     +  +T +  VG   +T  + +  + +NG   +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 507 SNGSVQVAH 481
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,366,765
Number of Sequences: 37544
Number of extensions: 481292
Number of successful extensions: 1218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)