Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_M14
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   100   2e-22
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   8.3  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  100 bits (240), Expect = 2e-22
 Identities = 48/95 (50%), Positives = 58/95 (61%)
 Frame = +1

Query: 121 PAKNVXCHKVHKVFTVQKVQGKGTLPRXXSRYXRKQQGYGGQSKPIFXXXXXXXXXIVLR 300
           P KN   H VH+V T  K      L +   RY RKQ G+GGQ+KP+F         +VLR
Sbjct: 13  PGKNCRKHTVHRV-TQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLR 71

Query: 301 LECADCKVRSQVALKXCKHFELGGDKKRKGQMIQF 405
           LEC  CK ++Q+ LK CKHFELGG+KK KG  IQF
Sbjct: 72  LECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 181 GKGTLPRXXSRYXRKQQGYGGQS 249
           G GT+P   +++ + QQGY  QS
Sbjct: 760 GYGTMPYNNNKFGQPQQGYMSQS 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,856
Number of Sequences: 5004
Number of extensions: 35202
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)